{
    "type": "genome",
    "identifier": "GCF_011751745.2",
    "organism": "Paramicrobacterium fandaimingii",
    "title": "Paramicrobacterium fandaimingii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Center for Disease Control and Prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011751745.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14073983",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2708079",
        "species_taxid": "2708079",
        "organism_name": "Paramicrobacterium fandaimingii",
        "infraspecific_name": "strain=HY82",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/14",
        "asm_name": "ASM1175174v2",
        "asm_submitter": "Chinese Center for Disease Control and Prevention",
        "gbrs_paired_asm": "GCA_011751745.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/751/745/GCF_011751745.2_ASM1175174v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3622163",
        "genome_size_ungapped": "3622163",
        "gc_percent": "63.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011751745.2-RS_2024_06_23",
        "annotation_date": "2024-06-23",
        "total_gene_count": "3520",
        "protein_coding_gene_count": "3436",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-14",
    "dateModified": "2020-09-14",
    "datePublished": "2020-09-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paramicrobacterium fandaimingii"
        ],
        "sample_taxid": [
            "2708079"
        ],
        "sample_host_organism": [
            "bat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.005 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3622163",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3622163",
        "N50 (bp)": "3622163",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.3",
        "Number of CDSs": "3479",
        "Average Protein Length": "318.6",
        "Coding Ratio (%)": "91.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbacterium fandaimingii",
                "strain": "strain=HY82",
                "accession": "GCA_011751745.2",
                "taxid": 2708079,
                "species_taxid": 2708079,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1207,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Microbacterium chengjingii",
                "strain": "strain=HY60",
                "accession": "GCA_011751765.2",
                "taxid": 2769067,
                "species_taxid": 2769067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9986,
                "matched_fragments": 880,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium lindanitolerans",
                "strain": "strain=DSM 22422",
                "accession": "GCA_006788875.1",
                "taxid": 550448,
                "species_taxid": 550448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5124,
                "matched_fragments": 705,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium agarici",
                "strain": "strain=DSM 21798",
                "accession": "GCA_002563955.1",
                "taxid": 630514,
                "species_taxid": 630514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4164,
                "matched_fragments": 698,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium humi",
                "strain": "strain=DSM 21799",
                "accession": "GCA_900105715.1",
                "taxid": 640635,
                "species_taxid": 640635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5385,
                "matched_fragments": 496,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces mariniharenae",
                "strain": "strain=NEAU-184",
                "accession": "GCA_008122505.1",
                "taxid": 2604423,
                "species_taxid": 2604423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5638,
                "matched_fragments": 236,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces cavernae",
                "strain": "strain=SYSU K20354",
                "accession": "GCA_021044935.1",
                "taxid": 2898659,
                "species_taxid": 2898659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4337,
                "matched_fragments": 242,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter zhangzhiyongii",
                "strain": "strain=DM1",
                "accession": "GCA_014775655.1",
                "taxid": 2768071,
                "species_taxid": 2768071,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2524,
                "matched_fragments": 170,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium invictum",
                "strain": "strain=DSM 19600",
                "accession": "GCA_023155715.1",
                "taxid": 515415,
                "species_taxid": 515415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.237,
                "matched_fragments": 192,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium invictum",
                "strain": "strain=JCM 17023",
                "accession": "GCA_015278285.1",
                "taxid": 515415,
                "species_taxid": 515415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1968,
                "matched_fragments": 193,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium yannicii",
                "strain": "strain=DSM 23203",
                "accession": "GCA_024055635.1",
                "taxid": 671622,
                "species_taxid": 671622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0553,
                "matched_fragments": 191,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium sediminis",
                "strain": "strain=YLB-01",
                "accession": "GCA_001689915.1",
                "taxid": 904291,
                "species_taxid": 904291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8796,
                "matched_fragments": 177,
                "total_fragments": 1207,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011751745.2",
                "gtdb_species": "s__Microbacterium_A fandaimingii",
                "ani": 100.0,
                "matched_fragments": 1207,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "98.82",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_011751765.2",
                "gtdb_species": "s__Microbacterium_A chengjingii",
                "ani": 84.9776,
                "matched_fragments": 882,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002563955.1",
                "gtdb_species": "s__Microbacterium_A agarici",
                "ani": 81.4125,
                "matched_fragments": 699,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "97.53",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900105715.1",
                "gtdb_species": "s__Microbacterium_A humi",
                "ani": 79.5894,
                "matched_fragments": 495,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003990045.1",
                "gtdb_species": "s__Labedella endophytica",
                "ani": 77.6611,
                "matched_fragments": 215,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Labedella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004078635.1",
                "gtdb_species": "s__Labedella phragmitis",
                "ani": 77.6193,
                "matched_fragments": 224,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Labedella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008122505.1",
                "gtdb_species": "s__Agromyces sp008122505",
                "ani": 77.5658,
                "matched_fragments": 235,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902809835.1",
                "gtdb_species": "s__Agromyces sp902809835",
                "ani": 77.5638,
                "matched_fragments": 206,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009647605.1",
                "gtdb_species": "s__Agromyces sp009647605",
                "ani": 77.4473,
                "matched_fragments": 240,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003668565.1",
                "gtdb_species": "s__Mycetocola_A zhadangensis",
                "ani": 77.362,
                "matched_fragments": 174,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Mycetocola_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001513675.1",
                "gtdb_species": "s__Microbacterium sp001513675",
                "ani": 77.3443,
                "matched_fragments": 203,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014775655.1",
                "gtdb_species": "s__Clavibacter zhangzhiyongii",
                "ani": 77.1858,
                "matched_fragments": 167,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002362255.1",
                "gtdb_species": "s__Microbacterium sp002362255",
                "ani": 77.1421,
                "matched_fragments": 185,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003384945.1",
                "gtdb_species": "s__Clavibacter sp003384945",
                "ani": 77.0506,
                "matched_fragments": 179,
                "total_fragments": 1207,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Paramicrobacterium",
        "fandaimingii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}