{ "type": "genome", "identifier": "GCF_011758645.1", "organism": "Brooklawnia cerclae", "title": "Brooklawnia cerclae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011758645.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512389", "wgs_master": "JAAMOZ000000000.1", "refseq_category": "reference genome", "taxid": "349934", "species_taxid": "349934", "organism_name": "Brooklawnia cerclae", "infraspecific_name": "strain=DSM 19609", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/26", "asm_name": "ASM1175864v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011758645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/758/645/GCF_011758645.1_ASM1175864v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3787554", "genome_size_ungapped": "3787554", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011758645.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "3520", "protein_coding_gene_count": "3448", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-26", "dateModified": "2020-03-26", "datePublished": "2020-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Brooklawnia cerclae" ], "sample_taxid": [ "349934" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.032 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3787554", "Number of Sequences": "6", "Longest Sequences (bp)": "2902969", "N50 (bp)": "2902969", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.9", "Number of CDSs": "3513", "Average Protein Length": "325.0", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brooklawnia cerclae", "strain": "strain=DSM 19609", "accession": "GCA_011758645.1", "taxid": 349934, "species_taxid": 349934, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1258, "total_fragments": 1260, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Propionibacterium acidifaciens", "strain": "strain=DSM 21887", "accession": "GCA_000426605.1", "taxid": 556499, "species_taxid": 556499, "relation_to_type": "type", "validated": true, "ani": 77.9613, "matched_fragments": 252, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionibacterium australiense", "strain": "strain=NCTC13651", "accession": "GCA_900637915.1", "taxid": 119981, "species_taxid": 119981, "relation_to_type": "type", "validated": true, "ani": 77.78, "matched_fragments": 248, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionibacterium australiense", "strain": "strain=NML98A072", "accession": "GCA_003666605.1", "taxid": 119981, "species_taxid": 119981, "relation_to_type": "type", "validated": true, "ani": 77.7777, "matched_fragments": 240, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionibacterium cyclohexanicum", "strain": "strain=DSM 16859", "accession": "GCA_900111365.1", "taxid": 64702, "species_taxid": 64702, "relation_to_type": "type", "validated": true, "ani": 77.719, "matched_fragments": 198, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium virtanenii", "strain": "strain=JS278", "accession": "GCA_003325455.1", "taxid": 2057246, "species_taxid": 2057246, "relation_to_type": "type", "validated": true, "ani": 77.6995, "matched_fragments": 186, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium acidipropionici", "strain": "strain=CGMCC 1.2230", "accession": "GCA_001441165.1", "taxid": 1748, "species_taxid": 1748, "relation_to_type": "type", "validated": true, "ani": 77.537, "matched_fragments": 197, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariimicrobium kwangyangense", "strain": "strain=DSM 21549", "accession": "GCA_000421525.1", "taxid": 396389, "species_taxid": 396389, "relation_to_type": "type", "validated": true, "ani": 77.3526, "matched_fragments": 191, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava coleopterorum", "strain": "strain=HDW11", "accession": "GCA_011393335.1", "taxid": 2714937, "species_taxid": 2714937, "relation_to_type": "type", "validated": true, "ani": 77.3421, "matched_fragments": 243, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionicimonas paludicola", "strain": "strain=DSM 15597", "accession": "GCA_002563675.1", "taxid": 185243, "species_taxid": 185243, "relation_to_type": "type", "validated": true, "ani": 77.3112, "matched_fragments": 195, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium acidipropionici", "strain": "strain=DSM 4900", "accession": "GCA_000427845.1", "taxid": 1748, "species_taxid": 1748, "relation_to_type": "type", "validated": true, "ani": 77.2709, "matched_fragments": 200, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raineyella fluvialis", "strain": "strain=CBA3103", "accession": "GCA_009646095.1", "taxid": 2662261, "species_taxid": 2662261, "relation_to_type": "type", "validated": true, "ani": 77.1571, "matched_fragments": 173, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariimicrobium ganziense", "strain": "strain=YIM S02566", "accession": "GCA_015352975.1", "taxid": 2773677, "species_taxid": 2773677, "relation_to_type": "type", "validated": true, "ani": 76.9992, "matched_fragments": 248, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava soli", "strain": "strain=YIM S02567", "accession": "GCA_014858005.1", "taxid": 2775081, "species_taxid": 2775081, "relation_to_type": "type", "validated": true, "ani": 76.9969, "matched_fragments": 238, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 76.9849, "matched_fragments": 197, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudopropionibacterium] massiliense", "strain": "strain=Marseille-P6184", "accession": "GCA_900607225.1", "taxid": 2220000, "species_taxid": 2220000, "relation_to_type": "type", "validated": true, "ani": 76.9511, "matched_fragments": 146, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus kandeliicorticis", "strain": "strain=DSM 100723", "accession": "GCA_014137855.1", "taxid": 1759536, "species_taxid": 1759536, "relation_to_type": "type", "validated": true, "ani": 76.7191, "matched_fragments": 200, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enemella dayhoffiae", "strain": "strain=NML 130396", "accession": "GCA_002250625.1", "taxid": 2016507, "species_taxid": 2016507, "relation_to_type": "type", "validated": true, "ani": 76.6717, "matched_fragments": 201, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 76.439, "matched_fragments": 167, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 76.4067, "matched_fragments": 213, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caniscabiei", "strain": "strain=NE06-02D", "accession": "GCA_014930365.1", "taxid": 2746961, "species_taxid": 2746961, "relation_to_type": "type", "validated": true, "ani": 75.7551, "matched_fragments": 189, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 75.2458, "matched_fragments": 100, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella pacifica", "strain": "strain=40Bstr34", "accession": "GCA_010500815.1", "taxid": 2696469, "species_taxid": 2696469, "relation_to_type": "type", "validated": true, "ani": 74.9605, "matched_fragments": 67, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011758645.1", "gtdb_species": "s__Brooklawnia cerclae", "ani": 100.0, "matched_fragments": 1256, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Brooklawnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_012517405.1", "gtdb_species": "s__Brooklawnia sp012517405", "ani": 78.6298, "matched_fragments": 358, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Brooklawnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000426605.1", "gtdb_species": "s__Propionibacterium acidifaciens", "ani": 77.9471, "matched_fragments": 253, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.24", "min_intra_species_ani": "99.02", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_012517115.1", "gtdb_species": "s__Brooklawnia sp012517115", "ani": 77.7787, "matched_fragments": 228, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Brooklawnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003666605.1", "gtdb_species": "s__Propionibacterium australiense", "ani": 77.7461, "matched_fragments": 240, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900289195.1", "gtdb_species": "s__Propionibacterium sp900289195", "ani": 77.6639, "matched_fragments": 230, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001441165.1", "gtdb_species": "s__Acidipropionibacterium acidipropionici", "ani": 77.5214, "matched_fragments": 198, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Acidipropionibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_011393335.1", "gtdb_species": "s__Brevilactibacter coleopterorum", "ani": 77.3741, "matched_fragments": 245, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Brevilactibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000826085.1", "gtdb_species": "s__Nigerium massiliense", "ani": 77.3422, "matched_fragments": 232, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Nigerium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017306015.1", "gtdb_species": "s__Propionicimonas sp017306015", "ani": 77.1966, "matched_fragments": 230, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionicimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015352975.1", "gtdb_species": "s__Aestuariimicrobium ganziense", "ani": 76.9991, "matched_fragments": 248, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Aestuariimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900607225.1", "gtdb_species": "s__Arachnia sp900607225", "ani": 76.9511, "matched_fragments": 146, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014137855.1", "gtdb_species": "s__Friedmanniella_A endophytica", "ani": 76.7077, "matched_fragments": 201, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002250625.1", "gtdb_species": "s__Enemella sp002250625", "ani": 76.6609, "matched_fragments": 202, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Enemella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018055925.1", "gtdb_species": "s__Micropruina sp018055925", "ani": 76.5996, "matched_fragments": 207, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Micropruina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876495.1", "gtdb_species": "s__Friedmanniella capsulata", "ani": 76.5011, "matched_fragments": 237, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009765225.1", "gtdb_species": "s__Leifsonia sp009765225", "ani": 76.1335, "matched_fragments": 106, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000701325.1", "gtdb_species": "s__Streptomyces sp000701325", "ani": 75.719, "matched_fragments": 171, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 6.5, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brooklawnia", "cerclae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }