{ "type": "genome", "identifier": "GCF_011758745.1", "organism": "Amycolatopsis granulosa", "title": "Amycolatopsis granulosa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011758745.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025003", "wgs_master": "JAANOV000000000.1", "refseq_category": "reference genome", "taxid": "185684", "species_taxid": "185684", "organism_name": "Amycolatopsis granulosa", "infraspecific_name": "strain=DSM 45669", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/26", "asm_name": "ASM1175874v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011758745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/758/745/GCF_011758745.1_ASM1175874v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5623989", "genome_size_ungapped": "5623989", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011758745.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "5545", "protein_coding_gene_count": "5446", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-26", "dateModified": "2020-03-26", "datePublished": "2020-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis granulosa" ], "sample_taxid": [ "185684" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 88.1143, "matched_fragments": 1512, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000371885.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 88.103, "matched_fragments": 1516, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 82.1372, "matched_fragments": 1199, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis 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"conclusive" }, { "accession": "GCF_014653945.1", "gtdb_species": "s__Amycolatopsis deserti", "ani": 88.7915, "matched_fragments": 1581, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003385215.1", "gtdb_species": "s__Amycolatopsis thermalba", "ani": 88.661, "matched_fragments": 1486, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { 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