{ "type": "genome", "identifier": "GCF_011758805.1", "organism": "Mycolicibacterium fluoranthenivorans", "title": "Mycolicibacterium fluoranthenivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011758805.1", "bioproject": "PRJNA224116", "biosample": "SAMN12024888", "wgs_master": "JAANOW000000000.1", "refseq_category": "na", "taxid": "258505", "species_taxid": "258505", "organism_name": "Mycolicibacterium fluoranthenivorans", "infraspecific_name": "strain=DSM 44556", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/26", "asm_name": "ASM1175880v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011758805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/758/805/GCF_011758805.1_ASM1175880v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6408998", "genome_size_ungapped": "6408998", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011758805.1-RS_2024_03_22", "annotation_date": "2024-03-22", "total_gene_count": "6264", "protein_coding_gene_count": "6123", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-26", "dateModified": "2020-03-26", "datePublished": "2020-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium fluoranthenivorans" ], "sample_taxid": [ "258505" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.757 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6408998", "Number of Sequences": "6", "Longest Sequences (bp)": "3695880", "N50 (bp)": "3695880", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "6252", "Average Protein Length": "316.7", "Coding Ratio (%)": "92.7", "Number of rRNAs": "6", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium fluoranthenivorans", "strain": "strain=DSM 44556", "accession": "GCA_011758805.1", "taxid": 258505, 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"matched_fragments": 929, "total_fragments": 2133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium lacusdiani", "strain": "strain=JXJ CY 35", "accession": "GCA_021916785.1", "taxid": 2895283, "species_taxid": 2895283, "relation_to_type": "type", "validated": true, "ani": 79.959, "matched_fragments": 971, "total_fragments": 2133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium arabiense", "strain": "strain=JCM 18538", "accession": "GCA_010731815.2", "taxid": 1286181, "species_taxid": 1286181, "relation_to_type": "type", "validated": true, "ani": 79.8393, "matched_fragments": 947, "total_fragments": 2133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.5834, "matched_fragments": 883, 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