{
    "type": "genome",
    "identifier": "GCF_011759685.1",
    "organism": "Cellulomonas uda",
    "title": "Cellulomonas uda",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011759685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12025146",
        "wgs_master": "JAAOZE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1714",
        "species_taxid": "1714",
        "organism_name": "Cellulomonas uda",
        "infraspecific_name": "strain=CECT 4284",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/27",
        "asm_name": "ASM1175968v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_011759685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/759/685/GCF_011759685.1_ASM1175968v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3567340",
        "genome_size_ungapped": "3567147",
        "gc_percent": "74.000000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011759685.1-RS_2024_04_19",
        "annotation_date": "2024-04-19",
        "total_gene_count": "3243",
        "protein_coding_gene_count": "3164",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-27",
    "dateModified": "2020-03-27",
    "datePublished": "2020-03-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cellulomonas uda"
        ],
        "sample_taxid": [
            "1714"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.924 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3567340",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1296815",
        "N50 (bp)": "715534",
        "Gap Ratio (%)": "0.005410",
        "GCcontent (%)": "73.8",
        "Number of CDSs": "3253",
        "Average Protein Length": "333.9",
        "Coding Ratio (%)": "91.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Cellulomonas uda",
                "strain": "strain=NBRC 3747",
                "accession": "GCA_006538705.1",
                "taxid": 1714,
                "species_taxid": 1714,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9542,
                "matched_fragments": 1125,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.5803,
                "matched_fragments": 1030,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas persica",
                "strain": "strain=NBRC 101101",
                "accession": "GCA_007989825.1",
                "taxid": 76861,
                "species_taxid": 76861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7978,
                "matched_fragments": 909,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas gelida",
                "strain": "strain=NBRC 3748",
                "accession": "GCA_006538725.1",
                "taxid": 1712,
                "species_taxid": 1712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5692,
                "matched_fragments": 914,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas gelida",
                "strain": "strain=JCM 1490",
                "accession": "GCA_014647015.1",
                "taxid": 1712,
                "species_taxid": 1712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5088,
                "matched_fragments": 944,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas gilvus",
                "strain": "strain=ATCC 13127",
                "accession": "GCA_000218545.1",
                "taxid": 11,
                "species_taxid": 11,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1668,
                "matched_fragments": 818,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas fulva",
                "strain": "strain=DKR-3",
                "accession": "GCA_018531375.1",
                "taxid": 2835530,
                "species_taxid": 2835530,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8557,
                "matched_fragments": 836,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas biazotea",
                "strain": "strain=NBRC12680",
                "accession": "GCA_004306155.1",
                "taxid": 1709,
                "species_taxid": 1709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1552,
                "matched_fragments": 667,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas soli",
                "strain": "strain=DSM 24484",
                "accession": "GCA_013409305.1",
                "taxid": 931535,
                "species_taxid": 931535,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0772,
                "matched_fragments": 671,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
                "strain": "strain=Sa3CUA2",
                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9026,
                "matched_fragments": 720,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas xylanilytica",
                "strain": "strain=NBRC 101102",
                "accession": "GCA_007989805.1",
                "taxid": 233583,
                "species_taxid": 233583,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8504,
                "matched_fragments": 715,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinotalea solisilvae",
                "strain": "strain=KACC 19191",
                "accession": "GCA_016464425.1",
                "taxid": 2072922,
                "species_taxid": 2072922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5243,
                "matched_fragments": 654,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia rustica",
                "strain": "strain=Sa4CUA1",
                "accession": "GCA_014836555.1",
                "taxid": 2762237,
                "species_taxid": 2762237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3662,
                "matched_fragments": 562,
                "total_fragments": 1185,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006538705.1",
                "gtdb_species": "s__Cellulomonas uda",
                "ani": 99.9542,
                "matched_fragments": 1125,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_007989825.1",
                "gtdb_species": "s__Cellulomonas persica",
                "ani": 85.8106,
                "matched_fragments": 908,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006538725.1",
                "gtdb_species": "s__Cellulomonas gelida",
                "ani": 85.5943,
                "matched_fragments": 911,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000218545.1",
                "gtdb_species": "s__Cellulomonas gilvus",
                "ani": 84.1463,
                "matched_fragments": 820,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018531375.1",
                "gtdb_species": "s__Cellulomonas sp018531375",
                "ani": 83.8924,
                "matched_fragments": 832,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007990245.1",
                "gtdb_species": "s__Cellulomonas composti",
                "ani": 83.1162,
                "matched_fragments": 777,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000708885.1",
                "gtdb_species": "s__Cellulomonas sp000708885",
                "ani": 82.3929,
                "matched_fragments": 658,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004306155.1",
                "gtdb_species": "s__Cellulomonas biazotea",
                "ani": 82.108,
                "matched_fragments": 672,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016862775.1",
                "gtdb_species": "s__Cellulomonas phragmiteti",
                "ani": 80.9583,
                "matched_fragments": 693,
                "total_fragments": 1185,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.019,
        "cell_length": 0.334,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 28.666,
        "optimum_ph": 7.856,
        "genome_size": 3563272.0,
        "gc_content": 73.851,
        "coding_genes": 3692.833,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 45.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.846,
        "coccus_cell_shape": 0.076,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.076,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Cellulomonas",
        "uda"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}