{ "type": "genome", "identifier": "GCF_011761355.1", "organism": "Paenibacillus lupini", "title": "Paenibacillus lupini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011761355.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025175", "wgs_master": "JAASRW000000000.1", "refseq_category": "reference genome", "taxid": "1450204", "species_taxid": "1450204", "organism_name": "Paenibacillus lupini", "infraspecific_name": "strain=CECT 8235", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/27", "asm_name": "ASM1176135v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011761355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/761/355/GCF_011761355.1_ASM1176135v1", "excluded_from_refseq": 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"missing" ], "sample_host_location_id": [], "data_size": "1.902 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6666604", "Number of Sequences": "19", "Longest Sequences (bp)": "1179866", "N50 (bp)": "702174", "Gap Ratio (%)": "0.004395", "GCcontent (%)": "46.8", "Number of CDSs": "6057", "Average Protein Length": "323.8", "Coding Ratio (%)": "88.3", "Number of rRNAs": "2", "Number of tRNAs": "79", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus lupini", "strain": "strain=CECT 8235", "accession": "GCA_011761355.1", "taxid": 1450204, "species_taxid": 1450204, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2211, "total_fragments": 2213, 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"min_intra_species_ani": "97.79", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014641555.1", "gtdb_species": "s__Paenibacillus_C radicis", "ani": 78.6805, "matched_fragments": 417, "total_fragments": 2213, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.187, "cell_length": 0.433, "doubling_h": 0.565, "growth_tmp": 37.0, "optimum_tmp": 31.323, "optimum_ph": 7.238, "genome_size": 6197949.921, "gc_content": 50.283, "coding_genes": 5381.029, "rRNA16S_genes": 10.237, "tRNA_genes": 93.313, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.918, "range_salinity": 0.0, 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