{
    "type": "genome",
    "identifier": "GCF_011761495.1",
    "organism": "Alkalibacillus almallahensis",
    "title": "Alkalibacillus almallahensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011761495.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12025527",
        "wgs_master": "JAASRU000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1379154",
        "species_taxid": "1379154",
        "organism_name": "Alkalibacillus almallahensis",
        "infraspecific_name": "strain=CECT 8373",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/27",
        "asm_name": "ASM1176149v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_011761495.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/761/495/GCF_011761495.1_ASM1176149v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2709255",
        "genome_size_ungapped": "2709068",
        "gc_percent": "38.500000",
        "replicon_count": "0",
        "scaffold_count": "36",
        "contig_count": "36",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011761495.1-RS_2024_04_19",
        "annotation_date": "2024-04-19",
        "total_gene_count": "2863",
        "protein_coding_gene_count": "2775",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-27",
    "dateModified": "2020-03-27",
    "datePublished": "2020-03-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkalibacillus almallahensis"
        ],
        "sample_taxid": [
            "1379154"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.770 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2709255",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "356995",
        "N50 (bp)": "176997",
        "Gap Ratio (%)": "0.006902",
        "GCcontent (%)": "38.3",
        "Number of CDSs": "2832",
        "Average Protein Length": "276.0",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Alkalibacillus almallahensis",
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                "accession": "GCA_011761495.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 884,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alkalibacillus haloalkaliphilus",
                "strain": "strain=NBRC 103110",
                "accession": "GCA_007991275.1",
                "taxid": 94136,
                "species_taxid": 94136,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7959,
                "matched_fragments": 239,
                "total_fragments": 886,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacillus aidingensis",
                "strain": "strain=YIM 98829",
                "accession": "GCA_014595945.1",
                "taxid": 2747607,
                "species_taxid": 2747607,
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                "validated": true,
                "ani": 77.4508,
                "matched_fragments": 160,
                "total_fragments": 886,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halalkalibacillus halophilus",
                "strain": "strain=DSM 18494",
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                "species_taxid": 392827,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1773,
                "matched_fragments": 133,
                "total_fragments": 886,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halalkalibacillus sediminis",
                "strain": "strain=B3227",
                "accession": "GCA_002844535.1",
                "taxid": 2018042,
                "species_taxid": 2018042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7066,
                "matched_fragments": 93,
                "total_fragments": 886,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011761495.1",
                "gtdb_species": "s__Alkalibacillus almallahensis",
                "ani": 100.0,
                "matched_fragments": 884,
                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000269905.1",
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                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007991275.1",
                "gtdb_species": "s__Alkalibacillus haloalkaliphilus",
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                "matched_fragments": 238,
                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004402015.1",
                "gtdb_species": "s__Filobacillus milosensis",
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                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Filobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014595945.1",
                "gtdb_species": "s__Alkalibacillus sp014595945",
                "ani": 77.5126,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003843875.1",
                "gtdb_species": "s__Aquisalibacillus elongatus",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Aquisalibacillus",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110685.1",
                "gtdb_species": "s__Piscibacillus halophilus",
                "ani": 76.7505,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Piscibacillus",
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            },
            {
                "accession": "GCF_002844535.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Halalkalibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.522,
        "cell_length": 0.551,
        "doubling_h": null,
        "growth_tmp": 32.5,
        "optimum_tmp": 33.812,
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        "genome_size": 2908057.0,
        "gc_content": 37.1,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.666,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Alkalibacillus",
        "almallahensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}