{ "type": "genome", "identifier": "GCF_011762025.1", "organism": "Sphingobium vermicomposti", "title": "Sphingobium vermicomposti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011762025.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025183", "wgs_master": "JAASQR000000000.1", "refseq_category": "reference genome", "taxid": "529005", "species_taxid": "529005", "organism_name": "Sphingobium vermicomposti", "infraspecific_name": "strain=DSM 21299", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/27", "asm_name": "ASM1176202v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011762025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/762/025/GCF_011762025.1_ASM1176202v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3389096", "genome_size_ungapped": "3389096", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011762025.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "3278", "protein_coding_gene_count": "3202", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-27", "dateModified": "2020-03-27", "datePublished": "2020-03-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobium vermicomposti" ], "sample_taxid": [ "529005" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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135719, "relation_to_type": "type", "validated": true, "ani": 80.9822, "matched_fragments": 537, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium terrigena", "strain": "strain=EO9", "accession": "GCA_003591655.1", "taxid": 2304063, "species_taxid": 2304063, "relation_to_type": "type", "validated": true, "ani": 80.9611, "matched_fragments": 570, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium amiense", "strain": "strain=NBRC 102518", "accession": "GCA_001591305.1", "taxid": 135719, "species_taxid": 135719, "relation_to_type": "type", "validated": true, "ani": 80.9058, "matched_fragments": 528, "total_fragments": 1126, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 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