{ "type": "genome", "identifier": "GCF_011762145.1", "organism": "Sphingomonas naasensis", "title": "Sphingomonas naasensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011762145.1", "bioproject": "PRJNA224116", "biosample": "SAMN12025020", "wgs_master": "JAASQM000000000.1", "refseq_category": "na", "taxid": "1344951", "species_taxid": "1344951", "organism_name": "Sphingomonas naasensis", "infraspecific_name": "strain=DSM 100060", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/27", "asm_name": "ASM1176214v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011762145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/762/145/GCF_011762145.1_ASM1176214v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4335120", "genome_size_ungapped": "4335023", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011762145.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4159", "protein_coding_gene_count": "4080", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-27", "dateModified": "2020-03-27", "datePublished": "2020-03-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas naasensis" ], "sample_taxid": [ "1344951" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.170 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4335120", "Number of Sequences": "6", "Longest Sequences (bp)": "1751882", "N50 (bp)": "1193674", "Gap Ratio (%)": "0.002238", "GCcontent (%)": "67.7", "Number of CDSs": "4135", "Average Protein Length": "320.8", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas naasensis", "strain": "strain=DSM 100060", "accession": "GCA_011762145.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1439, "total_fragments": 1440, 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78.9388, "matched_fragments": 558, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium cupriresistens", "strain": "strain=CCTCC AB 2011146", "accession": "GCA_004152865.1", "taxid": 1132417, "species_taxid": 1132417, "relation_to_type": "type", "validated": true, "ani": 77.7671, "matched_fragments": 378, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=DSM 133", "accession": "GCA_001548155.2", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 75.9497, "matched_fragments": 206, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=ATCC 19567", "accession": "GCA_001402875.1", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 75.9377, "matched_fragments": 209, "total_fragments": 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