{ "type": "genome", "identifier": "GCF_011764505.1", "organism": "Legionella antarctica", "title": "Legionella antarctica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Toho University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011764505.1", "bioproject": "PRJNA224116", "biosample": "SAMD00206674", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2708020", "species_taxid": "2708020", "organism_name": "Legionella antarctica", "infraspecific_name": "strain=TUM19329", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/13", "asm_name": "ASM1176450v1", "asm_submitter": "Toho University", "gbrs_paired_asm": "GCA_011764505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/764/505/GCF_011764505.1_ASM1176450v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3927137", "genome_size_ungapped": "3927137", "gc_percent": "39.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011764505.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3715", "protein_coding_gene_count": "3523", "non_coding_gene_count": "55", "pubmed_id": "34668737;32299881" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-13", "dateModified": "2020-03-13", "datePublished": "2020-03-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella antarctica" ], "sample_taxid": [ "2708020" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica:Skarvsnes, Naga-Ike lake" ], "sample_host_location_id": [], "data_size": "1.093 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3927137", "Number of Sequences": "3", "Longest Sequences (bp)": "3750805", "N50 (bp)": "3750805", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.1", "Number of CDSs": "3720", "Average Protein Length": "298.6", "Coding Ratio (%)": "84.8", "Number of rRNAs": "9", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella antarctica", "strain": "strain=TUM19329", "accession": "GCA_011764505.1", "taxid": 2708020, "species_taxid": 2708020, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1297, "total_fragments": 1307, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella fallonii", "strain": "strain=LLAP-10", "accession": "GCA_000953135.1", "taxid": 96230, "species_taxid": 96230, "relation_to_type": "type", "validated": true, "ani": 79.1652, "matched_fragments": 396, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bononiensis", "strain": "strain=30cs62", "accession": "GCA_016786415.1", "taxid": 2793102, "species_taxid": 2793102, "relation_to_type": "type", "validated": true, "ani": 78.7199, "matched_fragments": 288, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella moravica", "strain": "strain=ATCC 43877", "accession": "GCA_001467865.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 78.6991, "matched_fragments": 261, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella lytica", "strain": "strain=PCM 2298", "accession": "GCA_023921225.1", "taxid": 96232, "species_taxid": 96232, "relation_to_type": "type", "validated": true, "ani": 78.6631, "matched_fragments": 167, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella moravica", "strain": "strain=NCTC12239", "accession": "GCA_900452715.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 78.6524, "matched_fragments": 260, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=ATCC 49507", "accession": "GCA_001467955.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 78.6448, "matched_fragments": 286, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=NCTC12376", "accession": "GCA_900452695.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 78.6327, "matched_fragments": 289, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella moravica", "strain": "strain=DSM 19234", "accession": "GCA_000423305.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 78.489, "matched_fragments": 257, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella parisiensis", "strain": "strain=PF-209-C-C2", "accession": "GCA_001467945.1", "taxid": 45071, "species_taxid": 45071, "relation_to_type": "type", "validated": true, "ani": 78.4869, "matched_fragments": 195, "total_fragments": 1307, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella parisiensis", "strain": "strain=DSM 19216", "accession": "GCA_001736145.1", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000953135.1", "gtdb_species": "s__Legionella fallonii", "ani": 79.1456, "matched_fragments": 394, "total_fragments": 1307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000162755.2", "gtdb_species": "s__Legionella drancourtii", "ani": 78.9288, "matched_fragments": 211, "total_fragments": 1307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000373765.1", "gtdb_species": "s__Legionella shakespearei", "ani": 78.7687, "matched_fragments": 206, "total_fragments": 1307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016786215.1", "gtdb_species": "s__Legionella sp016786215", "ani": 78.6641, "matched_fragments": 291, "total_fragments": 1307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", 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"matched_fragments": 185, "total_fragments": 1307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "95.71", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_004283175.1", "gtdb_species": "s__Legionella longbeachae", "ani": 77.6805, "matched_fragments": 174, "total_fragments": 1307, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.324, "cell_length": 0.259, "doubling_h": 0.38, "growth_tmp": 36.183, "optimum_tmp": 33.77, "optimum_ph": 6.9, "genome_size": 3482612.786, "gc_content": 38.268, "coding_genes": 2803.262, "rRNA16S_genes": 3.5, "tRNA_genes": 42.766, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.888, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Legionella", "antarctica" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }