{
    "type": "genome",
    "identifier": "GCF_011769985.2",
    "organism": "Sulfurospirillum diekertiae",
    "title": "Sulfurospirillum diekertiae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Applied Ecology (CAS)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011769985.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11478956",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1854492",
        "species_taxid": "1854492",
        "organism_name": "Sulfurospirillum diekertiae",
        "infraspecific_name": "strain=ACSDCE",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/08/12",
        "asm_name": "ASM1176998v3",
        "asm_submitter": "Institute of Applied Ecology (CAS)",
        "gbrs_paired_asm": "GCA_011769985.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/769/985/GCF_011769985.2_ASM1176998v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2777717",
        "genome_size_ungapped": "2777717",
        "gc_percent": "38.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011769985.2-RS_2024_08_13",
        "annotation_date": "2024-08-13",
        "total_gene_count": "2900",
        "protein_coding_gene_count": "2804",
        "non_coding_gene_count": "59",
        "pubmed_id": "28665587"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-08-12",
    "dateModified": "2020-08-12",
    "datePublished": "2020-08-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sulfurospirillum diekertiae"
        ],
        "sample_taxid": [
            "1854492"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:MA, Holliston"
        ],
        "sample_host_location_id": [],
        "data_size": "0.782 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2777717",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2737849",
        "N50 (bp)": "2737849",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.7",
        "Number of CDSs": "2860",
        "Average Protein Length": "300.1",
        "Coding Ratio (%)": "92.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sulfurospirillum halorespirans",
                "strain": "strain=DSM 13726; PCE-M2",
                "accession": "GCA_001723605.1",
                "taxid": 194424,
                "species_taxid": 194424,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2406,
                "matched_fragments": 624,
                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurospirillum multivorans",
                "strain": "strain=DSM 12446",
                "accession": "GCA_000568815.1",
                "taxid": 66821,
                "species_taxid": 66821,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.15,
                "matched_fragments": 630,
                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurospirillum barnesii",
                "strain": "strain=SES-3",
                "accession": "GCA_000265295.1",
                "taxid": 44674,
                "species_taxid": 44674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6388,
                "matched_fragments": 368,
                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurospirillum deleyianum",
                "strain": "strain=DSM 6946",
                "accession": "GCA_000024885.1",
                "taxid": 65553,
                "species_taxid": 65553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5159,
                "matched_fragments": 352,
                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurospirillum arcachonense",
                "strain": "strain=DSM 9755",
                "accession": "GCA_000597725.1",
                "taxid": 57666,
                "species_taxid": 57666,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1235,
                "matched_fragments": 80,
                "total_fragments": 925,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002309535.1",
                "gtdb_species": "s__Sulfurospirillum sp002309535",
                "ani": 96.509,
                "matched_fragments": 830,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.54",
                "min_intra_species_ani": "96.51",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002162315.1",
                "gtdb_species": "s__Sulfurospirillum sp002162315",
                "ani": 92.9021,
                "matched_fragments": 808,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001723605.1",
                "gtdb_species": "s__Sulfurospirillum halorespirans",
                "ani": 83.2386,
                "matched_fragments": 624,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000568815.1",
                "gtdb_species": "s__Sulfurospirillum multivorans",
                "ani": 83.1322,
                "matched_fragments": 632,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000813345.1",
                "gtdb_species": "s__Sulfurospirillum arsenophilum",
                "ani": 83.0809,
                "matched_fragments": 601,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017860615.1",
                "gtdb_species": "s__Sulfurospirillum sp017860615",
                "ani": 82.1042,
                "matched_fragments": 579,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000743525.1",
                "gtdb_species": "s__Sulfurospirillum sp000743525",
                "ani": 82.097,
                "matched_fragments": 593,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002307095.1",
                "gtdb_species": "s__Sulfurospirillum sp002307095",
                "ani": 81.8689,
                "matched_fragments": 466,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001548035.1",
                "gtdb_species": "s__Sulfurospirillum sp001548035",
                "ani": 81.1403,
                "matched_fragments": 537,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000024885.1",
                "gtdb_species": "s__Sulfurospirillum deleyianum",
                "ani": 79.4928,
                "matched_fragments": 349,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009930355.1",
                "gtdb_species": "s__Sulfurospirillum sp009930355",
                "ani": 79.2651,
                "matched_fragments": 254,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016930915.1",
                "gtdb_species": "s__Sulfurospirillum sp016930915",
                "ani": 79.257,
                "matched_fragments": 347,
                "total_fragments": 925,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurospirillaceae;g__Sulfurospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.488,
        "cell_length": 0.102,
        "doubling_h": null,
        "growth_tmp": 28.777,
        "optimum_tmp": 27.5,
        "optimum_ph": 7.183,
        "genome_size": 2721523.535,
        "gc_content": 40.519,
        "coding_genes": 2708.866,
        "rRNA16S_genes": 2.4,
        "tRNA_genes": 43.6,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.5,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.5,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.428,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.142,
        "spiral_cell_shape": 0.428
    },
    "_genome_taxon": [
        "Sulfurospirillum",
        "diekertiae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}