{ "type": "genome", "identifier": "GCF_011777495.1", "organism": "Microvirga terricola", "title": "Microvirga terricola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011777495.1", "bioproject": "PRJNA224116", "biosample": "SAMN14421205", "wgs_master": "JAATJS000000000.1", "refseq_category": "reference genome", "taxid": "2719797", "species_taxid": "2719797", "organism_name": "Microvirga terricola", "infraspecific_name": "strain=c23x22", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/30", "asm_name": "ASM1177749v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_011777495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/777/495/GCF_011777495.1_ASM1177749v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3752118", "genome_size_ungapped": "3752118", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011777495.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3583", "protein_coding_gene_count": "3487", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-30", "dateModified": "2020-03-30", "datePublished": "2020-03-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga terricola" ], "sample_taxid": [ "2719797" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chebaling national nature reserve, Guangdong Province" ], "sample_host_location_id": [], "data_size": "1.049 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3752118", "Number of Sequences": "16", "Longest Sequences (bp)": "907806", "N50 (bp)": "793830", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "3568", "Average Protein Length": "312.6", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga alba", "strain": "strain=BT350", "accession": "GCA_015694465.1", "taxid": 2791025, "species_taxid": 2791025, "relation_to_type": "type", "validated": true, "ani": 83.8053, "matched_fragments": 874, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 81.4117, "matched_fragments": 673, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flavescens", "strain": "strain=c27j1", "accession": "GCA_003290125.1", "taxid": 2249811, "species_taxid": 2249811, "relation_to_type": "type", "validated": true, "ani": 81.3861, "matched_fragments": 650, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 81.3773, "matched_fragments": 666, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga zambiensis", "strain": "strain=WSM3693", "accession": "GCA_016735695.1", "taxid": 1402137, "species_taxid": 1402137, "relation_to_type": "type", "validated": true, "ani": 81.2709, "matched_fragments": 696, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga mediterraneensis", "strain": "strain=Marseille-Q2068", "accession": "GCA_013520865.1", "taxid": 2754695, "species_taxid": 2754695, "relation_to_type": "type", "validated": true, "ani": 81.1559, "matched_fragments": 681, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 81.0717, "matched_fragments": 682, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga ossetica", "strain": "strain=V5/3M", "accession": "GCA_002741015.1", "taxid": 1882682, "species_taxid": 1882682, "relation_to_type": "type", "validated": true, "ani": 81.0622, "matched_fragments": 711, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 81.0494, "matched_fragments": 643, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga splendida", "strain": "strain=BT325", "accession": "GCA_016427565.1", "taxid": 2795727, "species_taxid": 2795727, "relation_to_type": "type", "validated": true, "ani": 81.0377, "matched_fragments": 663, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga arabica", "strain": "strain=SV2184P", "accession": "GCA_016811235.1", "taxid": 1128671, "species_taxid": 1128671, "relation_to_type": "type", "validated": true, "ani": 81.013, "matched_fragments": 632, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, "species_taxid": 1682650, "relation_to_type": "type", "validated": true, "ani": 80.8641, "matched_fragments": 629, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga vignae", "strain": "strain=BR3299", "accession": "GCA_001017175.1", "taxid": 1225564, "species_taxid": 1225564, "relation_to_type": "type", "validated": true, "ani": 80.7558, "matched_fragments": 629, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerophila", "strain": "strain=DSM 21344", "accession": "GCA_003332305.1", "taxid": 670291, "species_taxid": 670291, "relation_to_type": "type", "validated": true, "ani": 80.5845, "matched_fragments": 596, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerophila", "strain": "strain=NBRC 106136", "accession": "GCA_007991675.1", "taxid": 670291, "species_taxid": 670291, "relation_to_type": "type", "validated": true, "ani": 80.5352, "matched_fragments": 594, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 78.1065, "matched_fragments": 380, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, 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