{ "type": "genome", "identifier": "GCF_011926545.1", "organism": "Sphingopyxis italica", "title": "Sphingopyxis italica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011926545.1", "bioproject": "PRJNA224116", "biosample": "SAMN13172986", "wgs_master": "JAATIT000000000.1", "refseq_category": "reference genome", "taxid": "1129133", "species_taxid": "1129133", "organism_name": "Sphingopyxis italica", "infraspecific_name": "strain=DSM 25229", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/02", "asm_name": "ASM1192654v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011926545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/926/545/GCF_011926545.1_ASM1192654v1", "excluded_from_refseq": 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"missing" ], "sample_host_location_id": [], "data_size": "1.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4042700", "Number of Sequences": "12", "Longest Sequences (bp)": "1653392", "N50 (bp)": "733382", "Gap Ratio (%)": "0.002424", "GCcontent (%)": "65.4", "Number of CDSs": "3818", "Average Protein Length": "322.4", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis italica", "strain": "strain=DSM 25229", "accession": "GCA_011926545.1", "taxid": 1129133, "species_taxid": 1129133, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1343, "total_fragments": 1343, 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