{
    "type": "genome",
    "identifier": "GCF_011927625.1",
    "organism": "Paenalcaligenes hominis",
    "title": "Paenalcaligenes hominis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011927625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13173079",
        "wgs_master": "JAATIZ000000000.1",
        "refseq_category": "na",
        "taxid": "643674",
        "species_taxid": "643674",
        "organism_name": "Paenalcaligenes hominis",
        "infraspecific_name": "strain=DSM 26613",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/02",
        "asm_name": "ASM1192762v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_011927625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/927/625/GCF_011927625.1_ASM1192762v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2728145",
        "genome_size_ungapped": "2728049",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011927625.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "2619",
        "protein_coding_gene_count": "2538",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-02",
    "dateModified": "2020-04-02",
    "datePublished": "2020-04-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenalcaligenes hominis"
        ],
        "sample_taxid": [
            "643674"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.781 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "2728145",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "844625",
        "N50 (bp)": "655841",
        "Gap Ratio (%)": "0.003519",
        "GCcontent (%)": "48.3",
        "Number of CDSs": "2555",
        "Average Protein Length": "326.9",
        "Coding Ratio (%)": "91.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenalcaligenes hominis",
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                "accession": "GCA_011927625.1",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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                "accession": "GCA_014635265.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 901,
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                "ani_threshold": 95,
                "status": "conclusive"
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                "organism_name": "Paenalcaligenes niemegkensis",
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                "status": "below_threshold"
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            {
                "organism_name": "Alcaligenes ammonioxydans",
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                "species_taxid": 2582914,
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                "ani": 77.0288,
                "matched_fragments": 57,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes pakistanensis",
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                "accession": "GCA_014652815.1",
                "taxid": 1482717,
                "species_taxid": 1482717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.793,
                "matched_fragments": 56,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alcaligenes faecalis subsp. faecalis",
                "strain": "strain=NBRC 13111",
                "accession": "GCA_000739855.1",
                "taxid": 32001,
                "species_taxid": 511,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 67,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_011927625.1",
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                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paenalcaligenes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alcaligenes",
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            {
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            {
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            {
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    "_genome_taxon": [
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        "hominis"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}