{
    "type": "genome",
    "identifier": "GCF_011927685.1",
    "organism": "Thalassospira tepidiphila",
    "title": "Thalassospira tepidiphila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011927685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13172964",
        "wgs_master": "JAATJD000000000.1",
        "refseq_category": "na",
        "taxid": "393657",
        "species_taxid": "393657",
        "organism_name": "Thalassospira tepidiphila",
        "infraspecific_name": "strain=DSM 18888",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/02",
        "asm_name": "ASM1192768v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_011927685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/927/685/GCF_011927685.1_ASM1192768v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4408247",
        "genome_size_ungapped": "4408057",
        "gc_percent": "55.000000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011927685.1-RS_2024_04_29",
        "annotation_date": "2024-04-29",
        "total_gene_count": "4070",
        "protein_coding_gene_count": "4003",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-02",
    "dateModified": "2020-04-02",
    "datePublished": "2020-04-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thalassospira tepidiphila"
        ],
        "sample_taxid": [
            "393657"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.239 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4408247",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "1580339",
        "N50 (bp)": "1438585",
        "Gap Ratio (%)": "0.004310",
        "GCcontent (%)": "54.9",
        "Number of CDSs": "4059",
        "Average Protein Length": "320.1",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thalassospira tepidiphila",
                "strain": "strain=DSM 18888",
                "accession": "GCA_011927685.1",
                "taxid": 393657,
                "species_taxid": 393657,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1465,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Thalassospira tepidiphila",
                "strain": "strain=MCCC 1A03514",
                "accession": "GCA_001662875.1",
                "taxid": 393657,
                "species_taxid": 393657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9816,
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                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Thalassospira profundimaris",
                "strain": "strain=WP0211",
                "accession": "GCA_000300275.1",
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                "species_taxid": 502049,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 95.4925,
                "matched_fragments": 1308,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Thalassospira indica",
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                "accession": "GCA_003403095.1",
                "taxid": 1891279,
                "species_taxid": 1891279,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.5843,
                "matched_fragments": 1344,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassospira australica",
                "strain": "strain=NP 3b2",
                "accession": "GCA_000763295.1",
                "taxid": 1528106,
                "species_taxid": 1528106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7377,
                "matched_fragments": 1058,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassospira povalilytica",
                "strain": "strain=Zumi 95",
                "accession": "GCA_002844235.1",
                "taxid": 732237,
                "species_taxid": 732237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0649,
                "matched_fragments": 1086,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassospira lohafexi",
                "strain": "strain=139Z-12",
                "accession": "GCA_002844275.1",
                "taxid": 744227,
                "species_taxid": 744227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0225,
                "matched_fragments": 1047,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001662875.1",
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                "matched_fragments": 1452,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.4963,
                "mean_intra_species_ani": "96.58",
                "min_intra_species_ani": "95.57",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 15,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000300275.1",
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                "matched_fragments": 1309,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.4963,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017922435.1",
                "gtdb_species": "s__Thalassospira sp017922435",
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                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.2246,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003403095.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001613795.1",
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                "matched_fragments": 1182,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
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                "num_clustered_genomes": 10,
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            },
            {
                "accession": "GCF_000948415.1",
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                "matched_fragments": 1206,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002709775.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_011806525.1",
                "gtdb_species": "s__Thalassospira sp011806525",
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                "matched_fragments": 1201,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.603,
        "cell_length": 0.161,
        "doubling_h": null,
        "growth_tmp": 35.0,
        "optimum_tmp": 43.0,
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        "gc_content": 54.9,
        "coding_genes": 4288.166,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 63.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Thalassospira",
        "tepidiphila"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}