{ "type": "genome", "identifier": "GCF_011927695.1", "organism": "Sphingomonas jejuensis", "title": "Sphingomonas jejuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011927695.1", "bioproject": "PRJNA224116", "biosample": "SAMN13173228", "wgs_master": "JAATJE000000000.1", "refseq_category": "reference genome", "taxid": "904715", "species_taxid": "904715", "organism_name": "Sphingomonas jejuensis", "infraspecific_name": "strain=DSM 27651", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/02", "asm_name": "ASM1192769v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011927695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/927/695/GCF_011927695.1_ASM1192769v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2962167", "genome_size_ungapped": "2962167", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011927695.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "3021", "protein_coding_gene_count": "2939", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-02", "dateModified": "2020-04-02", "datePublished": "2020-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas jejuensis" ], "sample_taxid": [ "904715" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 78.7727, "matched_fragments": 391, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 78.7713, "matched_fragments": 373, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gilva", "strain": "strain=ZDH117", "accession": "GCA_003515075.1", "taxid": 2305907, "species_taxid": 2305907, "relation_to_type": "type", "validated": true, "ani": 78.6778, "matched_fragments": 422, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas 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"GCA_900113315.1", "taxid": 1166337, "species_taxid": 1166337, "relation_to_type": "type", "validated": true, "ani": 78.5133, "matched_fragments": 398, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 78.5113, "matched_fragments": 439, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jeddahensis", "strain": "strain=G39", "accession": "GCA_001981525.1", "taxid": 1915074, "species_taxid": 1915074, "relation_to_type": "type", "validated": true, "ani": 78.4776, "matched_fragments": 311, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 78.4721, "matched_fragments": 397, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 78.4679, "matched_fragments": 420, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas parva", "strain": "strain=17J27-24", "accession": "GCA_004564275.1", "taxid": 2555898, "species_taxid": 2555898, "relation_to_type": "type", "validated": true, "ani": 78.4092, "matched_fragments": 326, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yunnanensis", "strain": "strain=YIM 3", "accession": "GCA_019898765.1", "taxid": 310400, "species_taxid": 310400, "relation_to_type": "type", "validated": true, "ani": 78.3849, "matched_fragments": 412, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinicella humi", "strain": "strain=QZX222", "accession": "GCA_003129465.1", "taxid": 2068657, "species_taxid": 2068657, "relation_to_type": "type", "validated": true, "ani": 78.2539, "matched_fragments": 289, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas laterariae", "strain": "strain=LNB2", "accession": "GCA_900188165.1", "taxid": 861865, "species_taxid": 861865, "relation_to_type": "type", "validated": true, "ani": 78.2529, "matched_fragments": 332, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas prati", "strain": "strain=DSM 103336", "accession": "GCA_014199405.1", "taxid": 1843237, "species_taxid": 1843237, "relation_to_type": "type", "validated": true, "ani": 78.0622, "matched_fragments": 335, "total_fragments": 981, 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"organism_name": "Aquisediminimonas profunda", "strain": "strain=DS48-3", "accession": "GCA_019443285.1", "taxid": 1550733, "species_taxid": 1550733, "relation_to_type": "type", "validated": true, "ani": 77.2267, "matched_fragments": 102, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011927695.1", "gtdb_species": "s__Sphingomonas_K jejuensis", "ani": 100.0, "matched_fragments": 980, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014641735.1", "gtdb_species": "s__Sphingomonas metalli", 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