{ "type": "genome", "identifier": "GCF_011927795.1", "organism": "Saonia flava", "title": "Saonia flava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011927795.1", "bioproject": "PRJNA224116", "biosample": "SAMN13173772", "wgs_master": "JAATJJ000000000.1", "refseq_category": "reference genome", "taxid": "523696", "species_taxid": "523696", "organism_name": "Saonia flava", "infraspecific_name": "strain=DSM 29762", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/02", "asm_name": "ASM1192779v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011927795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/927/795/GCF_011927795.1_ASM1192779v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3801316", "genome_size_ungapped": "3800739", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011927795.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3371", "protein_coding_gene_count": "3320", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-02", "dateModified": "2020-04-02", "datePublished": "2020-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Saonia flava" ], "sample_taxid": [ "523696" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.065 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3801316", "Number of Sequences": "5", "Longest Sequences (bp)": "2773624", "N50 (bp)": "2773624", "Gap Ratio (%)": "0.015179", "GCcontent (%)": "36.2", "Number of CDSs": "3304", "Average Protein Length": "349.0", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saonia flava", "strain": "strain=DSM 29762", "accession": "GCA_011927795.1", "taxid": 523696, "species_taxid": 523696, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1264, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Maribacter forsetii", "strain": "strain=DSM 18668", "accession": "GCA_000744105.1", "taxid": 444515, "species_taxid": 444515, "relation_to_type": "type", "validated": true, "ani": 77.0357, "matched_fragments": 164, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Costertonia aggregata", "strain": "strain=KCCM 42265", "accession": "GCA_013402795.1", "taxid": 343403, "species_taxid": 343403, "relation_to_type": "type", "validated": true, "ani": 76.9702, "matched_fragments": 175, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter palladensis", "strain": "strain=DSM 17539", "accession": "GCA_900129275.1", "taxid": 237373, "species_taxid": 237373, "relation_to_type": "type", "validated": true, "ani": 76.9492, "matched_fragments": 179, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter 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"GCA_005885635.1", "taxid": 2578118, "species_taxid": 2578118, "relation_to_type": "type", "validated": true, "ani": 76.8921, "matched_fragments": 166, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga tyrosinoxydans", "strain": "strain=DSM 21164", "accession": "GCA_900176415.1", "taxid": 504486, "species_taxid": 504486, "relation_to_type": "type", "validated": true, "ani": 76.8683, "matched_fragments": 186, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia russellii", "strain": "strain=KMM 3677", "accession": "GCA_018728565.1", "taxid": 248907, "species_taxid": 248907, "relation_to_type": "type", "validated": true, "ani": 76.8168, "matched_fragments": 169, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter sedimenticola", "strain": "strain=DSM 19840", "accession": "GCA_900188415.1", "taxid": 228956, "species_taxid": 228956, "relation_to_type": "type", "validated": true, "ani": 76.8047, "matched_fragments": 207, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter algicola", "strain": "strain=TG409", "accession": "GCA_000733925.1", "taxid": 616991, "species_taxid": 616991, "relation_to_type": "type", "validated": true, "ani": 76.7948, "matched_fragments": 193, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga omnivescoria", "strain": "strain=W5C", "accession": "GCA_001999725.1", "taxid": 1888890, "species_taxid": 1888890, "relation_to_type": "type", "validated": true, "ani": 76.7938, "matched_fragments": 186, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter arenosus", "strain": "strain=CAU 1321", "accession": "GCA_014610845.1", "taxid": 1854708, "species_taxid": 1854708, "relation_to_type": "type", "validated": true, "ani": 76.7725, "matched_fragments": 136, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga fucicola", "strain": "strain=DSM 24786", "accession": "GCA_900119145.1", "taxid": 76595, "species_taxid": 76595, "relation_to_type": "type", "validated": true, "ani": 76.7387, "matched_fragments": 185, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda parva", "strain": "strain=DSM 25885", "accession": "GCA_900215465.1", "taxid": 1247520, "species_taxid": 1247520, "relation_to_type": "type", "validated": true, "ani": 76.7321, "matched_fragments": 188, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga lytica", "strain": "strain=DSM 7489", "accession": "GCA_000190595.1", "taxid": 979, "species_taxid": 979, "relation_to_type": "type", "validated": true, "ani": 76.7315, "matched_fragments": 177, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceitalea dokdonensis", "strain": "strain=DOKDO 023", "accession": "GCA_001306415.1", "taxid": 346188, "species_taxid": 346188, "relation_to_type": "type", "validated": true, "ani": 76.6937, "matched_fragments": 131, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.653, "matched_fragments": 86, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda flava", "strain": "strain=DSM 22638", "accession": "GCA_900129665.1", "taxid": 570519, "species_taxid": 570519, "relation_to_type": "type", "validated": true, "ani": 76.6234, "matched_fragments": 124, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poritiphilus flavus", "strain": "strain=R33", "accession": "GCA_009901585.1", "taxid": 2697053, "species_taxid": 2697053, "relation_to_type": "type", "validated": true, "ani": 76.5729, "matched_fragments": 89, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aurantiaca", "strain": "strain=HME9304", "accession": "GCA_003269425.1", "taxid": 1383885, "species_taxid": 1383885, "relation_to_type": "type", "validated": true, "ani": 76.5538, "matched_fragments": 147, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_008017345.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 76.5329, "matched_fragments": 102, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter arcticus", 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