{ "type": "genome", "identifier": "GCF_011927835.1", "organism": "Neolewinella antarctica", "title": "Neolewinella antarctica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011927835.1", "bioproject": "PRJNA224116", "biosample": "SAMN13172327", "wgs_master": "JAATJH000000000.1", "refseq_category": "reference genome", "taxid": "442734", "species_taxid": "442734", "organism_name": "Neolewinella antarctica", "infraspecific_name": "strain=DSM 105096", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/02", "asm_name": "ASM1192783v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_011927835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/927/835/GCF_011927835.1_ASM1192783v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5103060", "genome_size_ungapped": "5102479", "gc_percent": "55.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011927835.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3979", "protein_coding_gene_count": "3913", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-02", "dateModified": "2020-04-02", "datePublished": "2020-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Neolewinella antarctica" ], "sample_taxid": [ "442734" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.452 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5103060", "Number of Sequences": "23", "Longest Sequences (bp)": "1328666", "N50 (bp)": "565515", "Gap Ratio (%)": "0.011385", "GCcontent (%)": "54.9", "Number of CDSs": "3952", "Average Protein Length": "368.1", "Coding Ratio (%)": "85.5", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neolewinella antarctica", "strain": "strain=DSM 105096", "accession": "GCA_011927835.1", "taxid": 442734, "species_taxid": 442734, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1689, "total_fragments": 1689, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neolewinella lacunae", "strain": "strain=KCTC 42187", "accession": "GCA_014349155.1", "taxid": 1517758, "species_taxid": 1517758, "relation_to_type": "type", "validated": true, "ani": 76.7339, "matched_fragments": 267, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella marina", "strain": "strain=DSM 104084", "accession": "GCA_011927705.1", "taxid": 438751, "species_taxid": 438751, "relation_to_type": "type", "validated": true, "ani": 76.692, "matched_fragments": 207, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella persica", "strain": "strain=DSM 23188", "accession": "GCA_000373105.1", "taxid": 70998, "species_taxid": 70998, "relation_to_type": "type", "validated": true, "ani": 76.6772, "matched_fragments": 175, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella marina", "strain": "strain=MKG-38", "accession": "GCA_002631205.1", "taxid": 438751, "species_taxid": 438751, "relation_to_type": "type", "validated": true, "ani": 76.648, "matched_fragments": 209, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella maritima", "strain": "strain=CECT 8419, type strain", "accession": "GCA_923081025.1", "taxid": 1383882, "species_taxid": 1383882, "relation_to_type": "type", "validated": true, "ani": 76.5671, "matched_fragments": 196, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella litorea", "strain": "strain=HSMS-39", "accession": "GCA_004803465.1", "taxid": 2562452, "species_taxid": 2562452, "relation_to_type": "type", "validated": true, "ani": 76.5229, "matched_fragments": 181, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella aurantiaca", "strain": "strain=SSH13", "accession": "GCA_008014675.1", "taxid": 2602767, "species_taxid": 2602767, "relation_to_type": "type", "validated": true, "ani": 76.5038, "matched_fragments": 175, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella aquimaris", "strain": "strain=DSM 105137", "accession": "GCA_014197245.1", "taxid": 1835722, "species_taxid": 1835722, "relation_to_type": "type", "validated": true, "ani": 76.4146, "matched_fragments": 178, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neolewinella agarilytica", "strain": "strain=DSM 24740", "accession": "GCA_900110645.1", "taxid": 478744, "species_taxid": 478744, "relation_to_type": "type", "validated": true, "ani": 76.3797, "matched_fragments": 179, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011927835.1", "gtdb_species": "s__Lewinella_A antarctica", "ani": 100.0, "matched_fragments": 1689, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001625015.1", "gtdb_species": "s__Lewinella_A sp001625015", "ani": 77.6476, "matched_fragments": 418, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014349155.1", "gtdb_species": "s__Lewinella_A lacunae", "ani": 76.7586, "matched_fragments": 264, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003390915.1", "gtdb_species": "s__Lewinella_A sp003390915", "ani": 76.704, "matched_fragments": 214, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000373105.1", "gtdb_species": "s__Lewinella_A persica", "ani": 76.6767, "matched_fragments": 175, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002631205.1", "gtdb_species": "s__Lewinella_A marina", "ani": 76.6578, "matched_fragments": 208, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003390935.1", "gtdb_species": "s__Lewinella_A sp003390935", "ani": 76.6009, "matched_fragments": 150, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004803465.1", "gtdb_species": "s__Lewinella_A litorea", "ani": 76.5121, "matched_fragments": 182, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008014675.1", "gtdb_species": "s__Lewinella_A aurantiaca", "ani": 76.5038, "matched_fragments": 175, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197245.1", "gtdb_species": "s__Lewinella_A aquimaris", "ani": 76.4146, "matched_fragments": 178, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110645.1", "gtdb_species": "s__Lewinella_A agarilytica", "ani": 76.3687, "matched_fragments": 180, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004375085.3", "gtdb_species": "s__Lewinella_A sp004375085", "ani": 76.2584, "matched_fragments": 167, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Neolewinella", "antarctica" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }