{ "type": "genome", "identifier": "GCF_011947235.1", "organism": "Planosporangium mesophilum", "title": "Planosporangium mesophilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King Mongkut's Institute of Technology Ladkrabang", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011947235.1", "bioproject": "PRJNA224116", "biosample": "SAMN14450469", "wgs_master": "JAATVX000000000.1", "refseq_category": "na", "taxid": "689768", "species_taxid": "689768", "organism_name": "Planosporangium mesophilum", "infraspecific_name": "strain=TBRC 2212", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/02", "asm_name": "ASM1194723v1", "asm_submitter": "King Mongkut's Institute of Technology Ladkrabang", "gbrs_paired_asm": "GCA_011947235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/947/235/GCF_011947235.1_ASM1194723v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6649555", "genome_size_ungapped": "6649555", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011947235.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "6191", "protein_coding_gene_count": "6054", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-02", "dateModified": "2020-04-02", "datePublished": "2020-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Planosporangium mesophilum" ], "sample_taxid": [ "689768" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yunnan" ], "sample_host_location_id": [], "data_size": "1.788 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6649555", "Number of Sequences": "86", "Longest Sequences (bp)": "1132619", "N50 (bp)": "204945", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "6196", "Average Protein Length": "320.7", "Coding Ratio (%)": "89.7", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora pattaloongensis", "strain": "strain=DSM 45245", "accession": "GCA_900107255.1", "taxid": 405436, "species_taxid": 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"validated": true, "ani": 79.1692, "matched_fragments": 947, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora siamensis", "strain": "strain=DSM 45097", "accession": "GCA_900090305.1", "taxid": 299152, "species_taxid": 299152, "relation_to_type": "type", "validated": true, "ani": 79.1559, "matched_fragments": 859, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 79.1359, "matched_fragments": 793, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora tulbaghiae", "strain": "strain=DSM 45142", "accession": "GCA_900091605.1", "taxid": 479978, "species_taxid": 479978, "relation_to_type": "type", "validated": true, "ani": 79.1175, "matched_fragments": 877, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chaiyaphumensis", "strain": "strain=DSM 45246", "accession": "GCA_900091435.1", "taxid": 307119, "species_taxid": 307119, "relation_to_type": "type", "validated": true, "ani": 79.0642, "matched_fragments": 942, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 79.0463, "matched_fragments": 914, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chersina", "strain": "strain=DSM 44151", "accession": "GCA_900091475.1", "taxid": 47854, "species_taxid": 47854, "relation_to_type": "type", "validated": true, "ani": 79.0359, "matched_fragments": 953, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora mirobrigensis", "strain": "strain=DSM 44830", "accession": "GCA_900091555.1", "taxid": 262898, "species_taxid": 262898, "relation_to_type": "type", "validated": true, "ani": 79.0047, "matched_fragments": 879, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 78.7011, "matched_fragments": 881, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinospora", "strain": "strain=DSM 43816", "accession": "GCA_900091495.1", "taxid": 1877, "species_taxid": 1877, "relation_to_type": "type", "validated": true, "ani": 78.6892, "matched_fragments": 868, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinospora", "strain": "strain=ATCC 15837", "accession": "GCA_002266845.1", "taxid": 1877, "species_taxid": 1877, "relation_to_type": "type", "validated": true, "ani": 78.6691, "matched_fragments": 862, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 78.6042, "matched_fragments": 981, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans rumicis", "strain": "strain=NBRC 108638", "accession": "GCA_011764445.1", "taxid": 1076125, "species_taxid": 1076125, "relation_to_type": "type", "validated": true, "ani": 78.5239, "matched_fragments": 965, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 78.5105, "matched_fragments": 1096, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora paridis", "strain": "strain=NEAU-CL2", "accession": "GCA_009720365.1", "taxid": 1617086, "species_taxid": 1617086, "relation_to_type": "type", "validated": true, "ani": 78.4219, "matched_fragments": 860, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans suffuscus", "strain": "strain=NBRC 105367", "accession": "GCA_011764565.1", "taxid": 624315, "species_taxid": 624315, "relation_to_type": "type", "validated": true, "ani": 78.3988, "matched_fragments": 955, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora vulcania", "strain": "strain=NEAU-JM1", "accession": "GCA_009720385.1", "taxid": 1460450, "species_taxid": 1460450, "relation_to_type": "type", "validated": true, "ani": 78.3791, "matched_fragments": 853, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans houttuyneae", "strain": "strain=NBRC 108639", "accession": "GCA_011764425.1", "taxid": 1076126, "species_taxid": 1076126, "relation_to_type": "type", "validated": true, "ani": 78.2258, "matched_fragments": 963, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium aliadipatigenens", "strain": "strain=NBRC 105644", "accession": "GCA_016863615.1", "taxid": 741659, "species_taxid": 741659, "relation_to_type": "type", "validated": true, "ani": 78.2036, "matched_fragments": 926, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora methionotrophica", "strain": "strain=IMSNU 22006", "accession": "GCA_011297335.1", "taxid": 121620, "species_taxid": 121620, "relation_to_type": "type", "validated": true, "ani": 78.2029, "matched_fragments": 839, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora citrea", "strain": "strain=NBRC 14495", "accession": "GCA_016862615.1", "taxid": 53366, "species_taxid": 53366, "relation_to_type": "type", "validated": true, "ani": 78.1768, "matched_fragments": 907, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora methionotrophica", "strain": "strain=NBRC 14553", "accession": "GCA_016862655.1", "taxid": 121620, "species_taxid": 121620, "relation_to_type": "type", "validated": true, "ani": 78.1388, "matched_fragments": 845, "total_fragments": 2181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium ochraceum", "strain": "strain=NBRC 16418", "accession": "GCA_016863655.1", 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