{ "type": "genome", "identifier": "GCF_012033735.1", "organism": "Streptomyces lonarensis", "title": "Streptomyces lonarensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Southern Oregon Univeristy", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012033735.1", "bioproject": "PRJNA224116", "biosample": "SAMN14448297", "wgs_master": "JAAVJD000000000.1", "refseq_category": "reference genome", "taxid": "700599", "species_taxid": "700599", "organism_name": "Streptomyces lonarensis", "infraspecific_name": "strain=NCL716", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/05", "asm_name": "ASM1203373v1", "asm_submitter": "Southern Oregon Univeristy", "gbrs_paired_asm": "GCA_012033735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/033/735/GCF_012033735.1_ASM1203373v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5954074", "genome_size_ungapped": "5953444", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "482", "contig_count": "482", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012033735.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "5149", "protein_coding_gene_count": "4882", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-05", "dateModified": "2020-04-05", "datePublished": "2020-04-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces lonarensis" ], "sample_taxid": [ "700599" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India:Lonar Lake in Buldhana district of Maharashtra State" ], "sample_host_location_id": [], "data_size": "1.594 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5954074", "Number of Sequences": "482", "Longest Sequences (bp)": "94615", "N50 (bp)": "20985", "Gap Ratio (%)": "0.010934", "GCcontent (%)": "73.8", "Number of CDSs": "4834", "Average Protein Length": "320.3", "Coding Ratio (%)": "78.0", "Number of rRNAs": "4", "Number of tRNAs": "75", "Number of CRISPRs": "12" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces lonarensis", "strain": "strain=NCL716", "accession": "GCA_012033735.1", "taxid": 700599, "species_taxid": 700599, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1722, "total_fragments": 1743, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces bohaiensis", "strain": "strain=11A07", "accession": "GCA_012033785.1", "taxid": 1431344, "species_taxid": 1431344, "relation_to_type": "type", "validated": true, "ani": 90.8161, "matched_fragments": 1231, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces otsuchiensis", "strain": "strain=OTB305", "accession": "GCA_004305975.1", "taxid": 2681388, "species_taxid": 2681388, "relation_to_type": "type", "validated": true, "ani": 83.7472, "matched_fragments": 1078, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces calidiresistens", "strain": "strain=DSM 42108", "accession": "GCA_014141525.1", "taxid": 1485586, "species_taxid": 1485586, "relation_to_type": "type", "validated": true, "ani": 80.6277, "matched_fragments": 591, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durbertensis", "strain": "strain=DSM 104538", "accession": "GCA_014156695.1", "taxid": 2448886, "species_taxid": 2448886, "relation_to_type": "type", "validated": true, "ani": 80.1265, "matched_fragments": 647, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alkaliterrae", "strain": "strain=OF1", "accession": "GCA_007097205.2", "taxid": 2213162, "species_taxid": 2213162, "relation_to_type": "type", "validated": true, "ani": 80.0292, "matched_fragments": 673, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces megasporus", "strain": "strain=NRRL B-16372", "accession": "GCA_000718985.1", "taxid": 44060, "species_taxid": 44060, "relation_to_type": "type", "validated": true, "ani": 79.9158, "matched_fragments": 752, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hainanensis", "strain": "strain=DSM 41900", "accession": "GCA_004348415.1", "taxid": 402648, "species_taxid": 402648, "relation_to_type": "type", "validated": true, "ani": 79.7451, "matched_fragments": 778, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces carminius", "strain": "strain=TRM SA0054", "accession": "GCA_002794255.1", "taxid": 2665496, "species_taxid": 2665496, "relation_to_type": "type", "validated": true, "ani": 79.6272, "matched_fragments": 805, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces zhaozhouensis", "strain": "strain=CGMCC 4.7095", "accession": "GCA_900230195.1", "taxid": 1300267, "species_taxid": 1300267, "relation_to_type": "type", "validated": true, "ani": 79.5299, "matched_fragments": 872, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=JCM 4580", "accession": "GCA_014655595.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 79.4829, "matched_fragments": 733, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gobiensis", "strain": "strain=1_25", "accession": "GCA_021216675.1", "taxid": 2875706, "species_taxid": 2875706, "relation_to_type": "type", "validated": true, "ani": 79.4087, "matched_fragments": 582, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces marincola", "strain": "strain=SCSIO 64649", "accession": "GCA_020410765.1", "taxid": 2878388, "species_taxid": 2878388, "relation_to_type": "type", "validated": true, "ani": 79.3643, "matched_fragments": 850, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces diacarni", "strain": 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"GCA_900188405.1", "taxid": 235986, "species_taxid": 235986, "relation_to_type": "type", "validated": true, "ani": 79.1089, "matched_fragments": 832, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces orinoci", "strain": "strain=NRRL B-3379", "accession": "GCA_003121295.1", "taxid": 67339, "species_taxid": 67339, "relation_to_type": "type", "validated": true, "ani": 79.0598, "matched_fragments": 691, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces olivaceoviridis", "strain": "strain=JCM 4499", "accession": "GCA_014650115.1", "taxid": 1921, "species_taxid": 1921, "relation_to_type": "type", "validated": true, "ani": 78.8831, "matched_fragments": 799, "total_fragments": 1743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, 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"coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "lonarensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }