{ "type": "genome", "identifier": "GCF_012033785.1", "organism": "Streptomyces bohaiensis", "title": "Streptomyces bohaiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Southern Oregon Univeristy", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012033785.1", "bioproject": "PRJNA224116", "biosample": "SAMN14448217", "wgs_master": "JAAVJC000000000.1", "refseq_category": "reference genome", "taxid": "1431344", "species_taxid": "1431344", "organism_name": "Streptomyces bohaiensis", "infraspecific_name": "strain=11A07", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/05", "asm_name": "ASM1203378v1", "asm_submitter": "Southern Oregon Univeristy", "gbrs_paired_asm": "GCA_012033785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/033/785/GCF_012033785.1_ASM1203378v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5631806", "genome_size_ungapped": "5631365", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "547", "contig_count": "547", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012033785.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "4949", "protein_coding_gene_count": "4637", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-05", "dateModified": "2020-04-05", "datePublished": "2020-04-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces bohaiensis" ], "sample_taxid": [ "1431344" ], "sample_host_organism": [ "Scomberomorus niphonius" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Bohai Sea" ], "sample_host_location_id": [], "data_size": "1.511 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5631806", "Number of Sequences": "547", "Longest Sequences (bp)": "117156", "N50 (bp)": "17710", "Gap Ratio (%)": "0.008079", "GCcontent (%)": "73.7", "Number of CDSs": "4547", "Average Protein Length": "318.9", "Coding Ratio (%)": "77.2", "Number of rRNAs": "4", "Number of tRNAs": "65", "Number of CRISPRs": "13" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces bohaiensis", "strain": "strain=11A07", "accession": "GCA_012033785.1", "taxid": 1431344, "species_taxid": 1431344, "relation_to_type": "type", "validated": true, "ani": 100.0, 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1194079, "species_taxid": 1194079, "relation_to_type": "type", "validated": true, "ani": 79.2918, "matched_fragments": 739, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 79.0859, "matched_fragments": 748, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces plumbidurans", "strain": "strain=KC 17012", "accession": "GCA_019857225.1", "taxid": 2814589, "species_taxid": 2814589, "relation_to_type": "type", "validated": true, "ani": 78.8548, "matched_fragments": 692, "total_fragments": 1602, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012033785.1", "gtdb_species": 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