{ "type": "genome", "identifier": "GCF_012037625.1", "organism": "Tamlana crocina", "title": "Tamlana crocina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Insititute of Oceanology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012037625.1", "bioproject": "PRJNA224116", "biosample": "SAMN14480719", "wgs_master": "JAAVJS000000000.1", "refseq_category": "reference genome", "taxid": "393006", "species_taxid": "393006", "organism_name": "Tamlana crocina", "infraspecific_name": "strain=HST1-43", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/06", "asm_name": "ASM1203762v1", "asm_submitter": "Insititute of Oceanology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_012037625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/037/625/GCF_012037625.1_ASM1203762v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3956945", "genome_size_ungapped": "3956745", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "945", "contig_count": "945", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012037625.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "3965", "protein_coding_gene_count": "3552", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-06", "dateModified": "2020-04-06", "datePublished": "2020-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Tamlana crocina" ], "sample_taxid": [ "393006" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.129 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 17.18, "strain_heterogeneity": 28.57, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3956945", "Number of Sequences": "945", "Longest Sequences (bp)": "323129", "N50 (bp)": "157899", "Gap Ratio (%)": "0.005054", "GCcontent (%)": "38.4", "Number of CDSs": "3063", "Average Protein Length": "354.9", "Coding Ratio (%)": "82.4", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tamlana crocina", "strain": "strain=HST1-43", "accession": "GCA_012037625.1", "taxid": 393006, "species_taxid": 393006, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1174, "total_fragments": 1176, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 78.7287, "matched_fragments": 367, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 78.6645, "matched_fragments": 281, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 78.4633, 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95, "status": "below_threshold" }, { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 78.1677, "matched_fragments": 368, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana agarivorans", "strain": "strain=JW-26", "accession": "GCA_001642835.1", "taxid": 481183, "species_taxid": 481183, "relation_to_type": "type", "validated": true, "ani": 78.0914, "matched_fragments": 276, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 78.0647, "matched_fragments": 256, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella 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"GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 77.9822, "matched_fragments": 305, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.9651, "matched_fragments": 336, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana carrageenivorans", "strain": "strain=UJ94", "accession": "GCA_002893765.1", "taxid": 2069432, "species_taxid": 2069432, "relation_to_type": "type", "validated": true, "ani": 77.9161, "matched_fragments": 303, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariibaculum marinum", "strain": "strain=IP7", "accession": "GCA_014596975.1", "taxid": 2683592, "species_taxid": 2683592, "relation_to_type": "type", "validated": true, "ani": 77.8171, "matched_fragments": 292, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariibaculum suncheonense", "strain": "strain=SC17", "accession": "GCA_014596935.1", "taxid": 1028745, "species_taxid": 1028745, "relation_to_type": "type", "validated": true, "ani": 77.7388, "matched_fragments": 287, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 77.6722, "matched_fragments": 221, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.6523, "matched_fragments": 264, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter lentus", "strain": "strain=HJM-3", "accession": "GCA_002806995.1", "taxid": 1699412, "species_taxid": 1699412, "relation_to_type": "type", "validated": true, "ani": 77.3526, "matched_fragments": 240, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.2737, "matched_fragments": 276, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas xylaniphaga", "strain": "strain=ST2L12", "accession": "GCA_001280435.1", "taxid": 1645915, "species_taxid": 1645915, "relation_to_type": "type", "validated": true, "ani": 77.1186, "matched_fragments": 163, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 17.18, "strain_heterogeneity": 28.57 }, "gtdb_result": [ { "accession": "GCF_004366715.1", "gtdb_species": "s__Meridianimaribacter flavus", "ani": 79.0769, "matched_fragments": 175, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Meridianimaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008033385.1", "gtdb_species": "s__Algibacter pacificus", "ani": 78.7287, "matched_fragments": 367, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016827605.1", "gtdb_species": "s__Jejuia sp016827605", "ani": 78.6416, "matched_fragments": 282, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Jejuia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000943555.1", "gtdb_species": "s__Tamlana_B nanhaiensis", "ani": 78.3515, "matched_fragments": 341, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900141715.1", "gtdb_species": "s__Arenitalea lutea", "ani": 78.2476, "matched_fragments": 321, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017814435.1", "gtdb_species": "s__Mariniflexile gromovii", "ani": 78.1949, "matched_fragments": 364, "total_fragments": 1176, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mariniflexile", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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