{ "type": "genome", "identifier": "GCF_012102615.1", "organism": "Haematospirillum jordaniae", "title": "Haematospirillum jordaniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012102615.1", "bioproject": "PRJNA224116", "biosample": "SAMN14487854", "wgs_master": "JAAVSV000000000.1", "refseq_category": "na", "taxid": "1549855", "species_taxid": "1549855", "organism_name": "Haematospirillum jordaniae", "infraspecific_name": "strain=H5569", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/06", "asm_name": "ASM1210261v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_012102615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/102/615/GCF_012102615.1_ASM1210261v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2397631", "genome_size_ungapped": "2397631", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012102615.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2246", "protein_coding_gene_count": "2171", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-06", "dateModified": "2020-04-06", "datePublished": "2020-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Haematospirillum jordaniae" ], "sample_taxid": [ "1549855" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Virginia" ], "sample_host_location_id": [], "data_size": "0.682 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2397631", "Number of Sequences": "30", "Longest Sequences (bp)": "666699", "N50 (bp)": "296221", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.4", "Number of CDSs": "2186", "Average Protein Length": "323.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Haematospirillum jordaniae", "strain": "strain=H5569", "accession": "GCA_012102615.1", "taxid": 1549855, "species_taxid": 1549855, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 781, "total_fragments": 782, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Haematospirillum jordaniae", "strain": "strain=H5569", "accession": "GCA_001611975.1", "taxid": 1549855, "species_taxid": 1549855, "relation_to_type": "type", "validated": true, "ani": 99.9994, "matched_fragments": 781, "total_fragments": 782, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novispirillum itersonii subsp. itersonii", "strain": "strain=ATCC 12639", "accession": "GCA_000381985.1", "taxid": 180199, "species_taxid": 189, "relation_to_type": "type", "validated": true, "ani": 76.6909, "matched_fragments": 97, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001611975.1", "gtdb_species": "s__Haematospirillum jordaniae", "ani": 99.9994, "matched_fragments": 781, "total_fragments": 782, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Haematospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCF_012102705.1", "gtdb_species": "s__Haematospirillum sp012102705", "ani": 94.0139, "matched_fragments": 709, "total_fragments": 782, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Haematospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012102745.1", "gtdb_species": "s__Haematospirillum sp012102745", "ani": 93.0122, "matched_fragments": 717, "total_fragments": 782, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Haematospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.29", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000381985.1", "gtdb_species": "s__Novispirillum itersonii", "ani": 76.6909, "matched_fragments": 97, "total_fragments": 782, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Novispirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156605.1", "gtdb_species": "s__Insolitispirillum peregrinum", "ani": 76.488, "matched_fragments": 62, "total_fragments": 782, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Insolitispirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2467623.333, "gc_content": 55.474, "coding_genes": 2187.0, "rRNA16S_genes": 5.0, "tRNA_genes": 58.0, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Haematospirillum", "jordaniae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }