{ "type": "genome", "identifier": "GCF_012184385.1", "organism": "Lentzea indica", "title": "Lentzea indica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Calcutta", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012184385.1", "bioproject": "PRJNA224116", "biosample": "SAMN12607144", "wgs_master": "VSRL00000000.1", "refseq_category": "reference genome", "taxid": "2604800", "species_taxid": "2604800", "organism_name": "Lentzea indica", "infraspecific_name": "strain=PSKA42", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/08", "asm_name": "ASM1218438v1", "asm_submitter": "University of Calcutta", "gbrs_paired_asm": "GCA_012184385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/184/385/GCF_012184385.1_ASM1218438v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9967719", "genome_size_ungapped": "9967419", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "634", "contig_count": "634", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012184385.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "10259", "protein_coding_gene_count": "9541", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-08", "dateModified": "2020-04-08", "datePublished": "2020-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentzea indica" ], "sample_taxid": [ "2604800" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Kashmir" ], 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"conclusive" }, { "organism_name": "Lentzea alba", "strain": "strain=NEAU-D13", "accession": "GCA_011067745.1", "taxid": 2714351, "species_taxid": 2714351, "relation_to_type": "type", "validated": true, "ani": 89.3885, "matched_fragments": 2276, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea aerocolonigenes", "strain": "strain=NRRL B-3298", "accession": "GCA_000719205.1", "taxid": 68170, "species_taxid": 68170, "relation_to_type": "type", "validated": true, "ani": 89.383, "matched_fragments": 2300, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea atacamensis", "strain": "strain=DSM 45479", "accession": "GCA_003269295.1", "taxid": 531938, "species_taxid": 531938, "relation_to_type": "type", "validated": true, "ani": 89.3829, "matched_fragments": 2182, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea aerocolonigenes", 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103732, "species_taxid": 103732, "relation_to_type": "type", "validated": true, "ani": 89.2415, "matched_fragments": 2165, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea kentuckyensis", "strain": "strain=NRRL B-24416", "accession": "GCA_002150765.1", "taxid": 360086, "species_taxid": 360086, "relation_to_type": "type", "validated": true, "ani": 89.2394, "matched_fragments": 2147, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea terrae", "strain": "strain=NEAU-LZS 42", "accession": "GCA_003265345.1", "taxid": 2200761, "species_taxid": 2200761, "relation_to_type": "type", "validated": true, "ani": 89.0008, "matched_fragments": 2333, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea waywayandensis", "strain": "strain=DSM 44232", "accession": "GCA_900115955.1", "taxid": 84724, "species_taxid": 84724, "relation_to_type": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea tibetensis", "strain": "strain=FXJ1.1311", "accession": "GCA_007845675.1", "taxid": 2591470, "species_taxid": 2591470, "relation_to_type": "type", "validated": true, "ani": 82.4811, "matched_fragments": 1640, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kibdelosporangium philippinense", "strain": "strain=ATCC 49844", "accession": "GCA_021390435.3", "taxid": 211113, "species_taxid": 211113, "relation_to_type": "type", "validated": true, "ani": 78.0017, "matched_fragments": 721, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012184385.1", "gtdb_species": "s__Lentzea indica", "ani": 100.0, "matched_fragments": 3007, "total_fragments": 3028, "gtdb_taxonomy": 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