{
    "type": "genome",
    "identifier": "GCF_012222825.1",
    "organism": "Allofrancisella frigidaquae",
    "title": "Allofrancisella frigidaquae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Swedish Defence Research Agency (FOI)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_012222825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11176079",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1085644",
        "species_taxid": "1085644",
        "organism_name": "Allofrancisella frigidaquae",
        "infraspecific_name": "strain=SYSU 10HL1970",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/09",
        "asm_name": "ASM1222282v1",
        "asm_submitter": "Swedish Defence Research Agency (FOI)",
        "gbrs_paired_asm": "GCA_012222825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/222/825/GCF_012222825.1_ASM1222282v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1674180",
        "genome_size_ungapped": "1674180",
        "gc_percent": "32.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_012222825.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "1578",
        "protein_coding_gene_count": "1495",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-09",
    "dateModified": "2020-04-09",
    "datePublished": "2020-04-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Allofrancisella frigidaquae"
        ],
        "sample_taxid": [
            "1085644"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Guangzhou"
        ],
        "sample_host_location_id": [],
        "data_size": "0.463 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1674180",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1674180",
        "N50 (bp)": "1674180",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.1",
        "Number of CDSs": "1527",
        "Average Protein Length": "327.4",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "10",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Allofrancisella frigidaquae",
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                "accession": "GCA_012222825.1",
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                "species_taxid": 1085644,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 557,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Allofrancisella inopinata",
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                "accession": "GCA_012222965.1",
                "taxid": 1085647,
                "species_taxid": 1085647,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allofrancisella inopinata",
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                "species_taxid": 1085647,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Allofrancisella guangzhouensis",
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                "species_taxid": 594679,
                "relation_to_type": "type",
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                "ani": 87.2239,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella opportunistica",
                "strain": "strain=PA05-1188",
                "accession": "GCA_003347135.1",
                "taxid": 2016517,
                "species_taxid": 2016517,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella hispaniensis",
                "strain": "strain=CCUG 58020",
                "accession": "GCA_001608445.1",
                "taxid": 622488,
                "species_taxid": 622488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8957,
                "matched_fragments": 193,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Francisella noatunensis subsp. noatunensis",
                "strain": "strain=2005/50/F292-6",
                "accession": "GCA_009823375.1",
                "taxid": 360196,
                "species_taxid": 657445,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3898,
                "matched_fragments": 161,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_012222825.1",
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                "matched_fragments": 557,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_012222965.1",
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                "matched_fragments": 482,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Allofrancisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
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                "num_clustered_genomes": 2,
                "status": "-"
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            {
                "accession": "GCF_000815225.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Allofrancisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
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            },
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                "accession": "GCF_003347135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.85",
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                "num_clustered_genomes": 4,
                "status": "-"
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                "accession": "GCF_001885235.1",
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            {
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                "mean_intra_species_ani": "N/A",
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            {
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            {
                "accession": "GCF_003290445.1",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "frigidaquae"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}