{ "type": "genome", "identifier": "GCF_012271785.1", "organism": "Paeniglutamicibacter terrestris", "title": "Paeniglutamicibacter terrestris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chulalongkorn university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012271785.1", "bioproject": "PRJNA224116", "biosample": "SAMN14513858", "wgs_master": "JAAWVT000000000.1", "refseq_category": "reference genome", "taxid": "2723403", "species_taxid": "2723403", "organism_name": "Paeniglutamicibacter terrestris", "infraspecific_name": "strain=ANT13_2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/09", "asm_name": "ASM1227178v1", "asm_submitter": "Chulalongkorn university", "gbrs_paired_asm": "GCA_012271785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/271/785/GCF_012271785.1_ASM1227178v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4340083", "genome_size_ungapped": "4340083", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012271785.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "3933", "protein_coding_gene_count": "3840", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-09", "dateModified": "2020-04-09", "datePublished": "2020-04-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Paeniglutamicibacter terrestris" ], "sample_taxid": [ "2723403" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: around Great Wall Station" ], "sample_host_location_id": [], "data_size": "1.229 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4340083", "Number of Sequences": "31", "Longest Sequences (bp)": "1282768", "N50 (bp)": "338794", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "3986", "Average Protein Length": "314.9", "Coding Ratio (%)": "86.8", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paeniglutamicibacter terrestris", "strain": "strain=ANT13_2", "accession": "GCA_012271785.1", "taxid": 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254788, "relation_to_type": "type", "validated": true, "ani": 80.8541, "matched_fragments": 659, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter cryotolerans", "strain": "strain=DSM 22826", "accession": "GCA_014190875.1", "taxid": 670079, "species_taxid": 670079, "relation_to_type": "type", "validated": true, "ani": 79.3724, "matched_fragments": 408, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella halotolerans", "strain": "strain=DSM 17364", "accession": "GCA_004217565.1", "taxid": 370736, "species_taxid": 370736, "relation_to_type": "type", "validated": true, "ani": 78.0535, "matched_fragments": 224, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella salsuginis", "strain": "strain=KCTC 19466", "accession": "GCA_014651715.1", "taxid": 578222, "species_taxid": 578222, "relation_to_type": "type", 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"matched_fragments": 234, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.7554, "matched_fragments": 230, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.7264, "matched_fragments": 231, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 77.5217, "matched_fragments": 257, "total_fragments": 1433, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003287975.1", "gtdb_species": "s__Paeniglutamicibacter sp003287975", "ani": 81.9698, "matched_fragments": 796, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876535.1", "gtdb_species": "s__Paeniglutamicibacter kerguelensis", "ani": 80.8547, "matched_fragments": 658, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paeniglutamicibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.447, "cell_length": 0.127, "doubling_h": null, "growth_tmp": 22.916, "optimum_tmp": 20.125, "optimum_ph": 7.5, "genome_size": 4338023.5, "gc_content": 63.0, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.25, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paeniglutamicibacter", "terrestris" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }