{ "type": "genome", "identifier": "GCF_012275535.1", "organism": "Hymenobacter artigasi", "title": "Hymenobacter artigasi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012275535.1", "bioproject": "PRJNA224116", "biosample": "SAMN14420499", "wgs_master": "JAAVTK000000000.1", "refseq_category": "reference genome", "taxid": "2719616", "species_taxid": "2719616", "organism_name": "Hymenobacter artigasi", "infraspecific_name": "strain=1B", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/13", "asm_name": "ASM1227553v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_012275535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/275/535/GCF_012275535.1_ASM1227553v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5509658", "genome_size_ungapped": "5509341", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012275535.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4635", "protein_coding_gene_count": "4556", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-13", "dateModified": "2020-04-13", "datePublished": "2020-04-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter artigasi" ], "sample_taxid": [ "2719616" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.537 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5509658", "Number of Sequences": "39", "Longest Sequences (bp)": "867450", "N50 (bp)": "291138", "Gap Ratio (%)": "0.005754", "GCcontent (%)": "61.2", "Number of CDSs": "4602", "Average Protein Length": "343.8", "Coding Ratio (%)": "86.2", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter artigasi", "strain": "strain=1B", "accession": "GCA_012275535.1", "taxid": 2719616, "species_taxid": 2719616, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1815, "total_fragments": 1816, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 85.3198, "matched_fragments": 1304, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 84.5989, "matched_fragments": 1247, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter ruricola", "strain": "strain=BT662", "accession": "GCA_015694525.1", "taxid": 2791023, "species_taxid": 2791023, "relation_to_type": "type", "validated": true, "ani": 84.4746, "matched_fragments": 1217, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter properus", "strain": "strain=BT439", "accession": "GCA_015694735.1", "taxid": 2791026, "species_taxid": 2791026, "relation_to_type": "type", "validated": true, "ani": 84.0236, "matched_fragments": 1210, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter frigidus", "strain": "strain=CGMCC 1.14966", "accession": "GCA_014640435.1", "taxid": 1524095, "species_taxid": 1524095, "relation_to_type": "type", "validated": true, "ani": 83.8981, "matched_fragments": 1116, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter lapidarius", "strain": "strain=CCM 8643", "accession": "GCA_001816145.1", "taxid": 1908237, "species_taxid": 1908237, "relation_to_type": "type", "validated": true, "ani": 83.3833, "matched_fragments": 1050, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sedentarius", "strain": "strain=DG5B", "accession": "GCA_001507645.1", "taxid": 1411621, "species_taxid": 1411621, "relation_to_type": "type", "validated": true, "ani": 83.3489, "matched_fragments": 1116, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacialis", "strain": "strain=CCM 8648", "accession": "GCA_001816165.1", "taxid": 1908236, "species_taxid": 1908236, "relation_to_type": "type", "validated": true, "ani": 83.3302, "matched_fragments": 1045, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter jeongseonensis", "strain": "strain=BT683", "accession": "GCA_015694725.1", "taxid": 2791027, "species_taxid": 2791027, "relation_to_type": "type", "validated": true, "ani": 82.4983, "matched_fragments": 1079, "total_fragments": 1816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter montanus", "strain": "strain=BT664", "accession": "GCA_014699115.1", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016056375.1", "gtdb_species": "s__Hymenobacter negativus_A", "ani": 87.4721, "matched_fragments": 1321, "total_fragments": 1816, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015694525.1", "gtdb_species": "s__Hymenobacter ruricola", "ani": 84.4352, "matched_fragments": 1222, "total_fragments": 1816, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, 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