{ "type": "genome", "identifier": "GCF_012276755.1", "organism": "Marichromatium bheemlicum", "title": "Marichromatium bheemlicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bellevue University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012276755.1", "bioproject": "PRJNA224116", "biosample": "SAMN14553635", "wgs_master": "JAAXKX000000000.1", "refseq_category": "reference genome", "taxid": "365339", "species_taxid": "365339", "organism_name": "Marichromatium bheemlicum", "infraspecific_name": "strain=DSM 18632", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/13", "asm_name": "Mbh", "asm_submitter": "Bellevue University", "gbrs_paired_asm": "GCA_012276755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/276/755/GCF_012276755.1_Mbh", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3644688", "genome_size_ungapped": "3644688", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012276755.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3221", "protein_coding_gene_count": "3130", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-13", "dateModified": "2020-04-13", "datePublished": "2020-04-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Marichromatium bheemlicum" ], "sample_taxid": [ "365339" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3644688", "Number of Sequences": "58", "Longest Sequences (bp)": "368135", "N50 (bp)": "127209", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "3141", "Average Protein Length": "338.5", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marichromatium bheemlicum", "strain": "strain=DSM 18632", "accession": "GCA_012276755.1", "taxid": 365339, "species_taxid": 365339, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1185, "total_fragments": 1187, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 91.2726, "matched_fragments": 1041, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 91.2714, "matched_fragments": 1073, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 90.8855, "matched_fragments": 1041, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 80.0618, "matched_fragments": 521, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 79.9833, "matched_fragments": 500, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiorhodococcus minor", "strain": "strain=DSM 11518", "accession": "GCA_010820565.1", "taxid": 57489, "species_taxid": 57489, "relation_to_type": "type", "validated": true, "ani": 78.9699, "matched_fragments": 493, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis minor", "strain": "strain=DSM 178", "accession": "GCA_016653465.1", "taxid": 61597, "species_taxid": 61597, "relation_to_type": "type", "validated": true, "ani": 78.475, "matched_fragments": 412, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa bogorovii", "strain": "strain=BBS", "accession": "GCA_021228795.1", "taxid": 521689, "species_taxid": 521689, "relation_to_type": "type", "validated": true, "ani": 78.4044, "matched_fragments": 407, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa rosea", "strain": "strain=DSM 235", "accession": "GCA_003634315.1", "taxid": 69360, "species_taxid": 69360, "relation_to_type": "type", "validated": true, "ani": 78.3722, "matched_fragments": 451, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.859, "matched_fragments": 225, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 76.2443, "matched_fragments": 145, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 76.2203, "matched_fragments": 177, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_001936175.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 75.5426, "matched_fragments": 137, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovirga rhinocerotis", "strain": "strain=DSM 25903", "accession": "GCA_004363955.1", "taxid": 1339210, "species_taxid": 1339210, "relation_to_type": "type", "validated": true, "ani": 75.4195, "matched_fragments": 95, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter medicamentivorans", "strain": "strain=I11", "accession": "GCA_000240225.2", "taxid": 1097667, "species_taxid": 1097667, "relation_to_type": "type", "validated": true, "ani": 75.0048, "matched_fragments": 127, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012276755.1", "gtdb_species": "s__Marichromatium bheemlicum", "ani": 100.0, "matched_fragments": 1185, "total_fragments": 1187, 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