{ "type": "genome", "identifier": "GCF_012395185.1", "organism": "Vibrio aestuarianus", "title": "Vibrio aestuarianus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IFREMER", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012395185.1", "bioproject": "PRJNA224116", "biosample": "SAMN14562735", "wgs_master": "JAAZTU000000000.1", "refseq_category": "na", "taxid": "28171", "species_taxid": "28171", "organism_name": "Vibrio aestuarianus", "infraspecific_name": "strain=LMG 7909", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/15", "asm_name": "ASM1239518v1", "asm_submitter": "IFREMER", "gbrs_paired_asm": "GCA_012395185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/395/185/GCF_012395185.1_ASM1239518v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4149197", "genome_size_ungapped": "4149197", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012395185.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "3798", "protein_coding_gene_count": "3633", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-15", "dateModified": "2020-04-15", "datePublished": "2020-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio aestuarianus" ], "sample_taxid": [ "28171" ], "sample_host_organism": [ "Water" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.191 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4149197", "Number of Sequences": "111", "Longest Sequences (bp)": "190123", "N50 (bp)": "96002", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.6", "Number of CDSs": "3650", "Average Protein Length": "323.3", "Coding Ratio (%)": "85.3", "Number of rRNAs": "2", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio aestuarianus", "strain": "strain=LMG 7909", "accession": "GCA_012395185.1", "taxid": 28171, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1324, "total_fragments": 1326, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio aestuarianus subsp. francensis", "strain": "strain=02/041", "accession": "GCA_012395215.1", "taxid": 1443279, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 97.5114, "matched_fragments": 1115, "total_fragments": 1326, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio aestuarianus subsp. cardii", "strain": "strain=12/122 3T3", "accession": "GCA_011090275.1", "taxid": 2807650, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 97.4865, "matched_fragments": 1116, "total_fragments": 1326, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=NCTC12159", "accession": "GCA_900452855.1", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 81.7966, "matched_fragments": 725, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=DSM 21597", "accession": 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"below_threshold" }, { "organism_name": "Vibrio marinisediminis", "strain": "strain=404", "accession": "GCA_014050145.1", "taxid": 2758441, "species_taxid": 2758441, "relation_to_type": "type", "validated": true, "ani": 78.9995, "matched_fragments": 348, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9548, "matched_fragments": 385, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 78.9537, "matched_fragments": 336, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 78.8629, "matched_fragments": 396, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", "strain": "strain=NFV-1", "accession": "GCA_015686695.1", "taxid": 2789781, "species_taxid": 2789781, "relation_to_type": "type", "validated": true, "ani": 78.7148, "matched_fragments": 287, "total_fragments": 1326, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012395185.1", "gtdb_species": "s__Vibrio aestuarianus", "ani": 100.0, "matched_fragments": 1324, "total_fragments": 1326, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 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