{
    "type": "genome",
    "identifier": "GCF_012395945.1",
    "organism": "Nocardia coubleae",
    "title": "Nocardia coubleae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bacterial Special Pathogens Branch (CDC)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_012395945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14517881",
        "wgs_master": "JAAXOM000000000.1",
        "refseq_category": "na",
        "taxid": "356147",
        "species_taxid": "356147",
        "organism_name": "Nocardia coubleae",
        "infraspecific_name": "strain=DSM 44960",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/15",
        "asm_name": "ASM1239594v1",
        "asm_submitter": "Bacterial Special Pathogens Branch (CDC)",
        "gbrs_paired_asm": "GCA_012395945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/395/945/GCF_012395945.1_ASM1239594v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6623463",
        "genome_size_ungapped": "6623463",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_012395945.1-RS_2024_09_28",
        "annotation_date": "2024-09-28",
        "total_gene_count": "6178",
        "protein_coding_gene_count": "6079",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-15",
    "dateModified": "2020-04-15",
    "datePublished": "2020-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia coubleae"
        ],
        "sample_taxid": [
            "356147"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Kuwait"
        ],
        "sample_host_location_id": [],
        "data_size": "1.801 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.78,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6623463",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "1606489",
        "N50 (bp)": "762188",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.9",
        "Number of CDSs": "6187",
        "Average Protein Length": "323.1",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nocardia coubleae",
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                "species_taxid": 356147,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2198,
                "total_fragments": 2198,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardia coubleae",
                "strain": "strain=NBRC 108252",
                "accession": "GCA_001612805.1",
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                "species_taxid": 356147,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9903,
                "matched_fragments": 2178,
                "total_fragments": 2198,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardia ignorata",
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                "accession": "GCA_004362495.1",
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                "species_taxid": 145285,
                "relation_to_type": "type",
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                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardia ignorata",
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                "accession": "GCA_001612905.1",
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                "species_taxid": 145285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9485,
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                "total_fragments": 2198,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardia rosealba",
                "strain": "strain=NEAU-G4",
                "accession": "GCA_020216065.1",
                "taxid": 2878563,
                "species_taxid": 2878563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5753,
                "matched_fragments": 1903,
                "total_fragments": 2198,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Nocardia salmonicida",
                "strain": "strain=NBRC 13393",
                "accession": "GCA_001613085.1",
                "taxid": 53431,
                "species_taxid": 53431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8518,
                "matched_fragments": 1555,
                "total_fragments": 2198,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia salmonicida subsp. cummidelens",
                "strain": "strain=NBRC 100378",
                "accession": "GCA_001612865.1",
                "taxid": 2800120,
                "species_taxid": 53431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6796,
                "matched_fragments": 1540,
                "total_fragments": 2198,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.78,
            "strain_heterogeneity": 0.0
        },
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            {
                "accession": "GCF_001612805.1",
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                "total_fragments": 2198,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 96.9719,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_001612905.1",
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                "total_fragments": 2198,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 96.9719,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013839555.1",
                "gtdb_species": "s__Nocardia sp013839555",
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                "matched_fragments": 1496,
                "total_fragments": 2198,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.2705,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_001612825.1",
                "gtdb_species": "s__Nocardia caishijiensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
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                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014646295.1",
                "gtdb_species": "s__Nocardia rhizosphaerihabitans",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001613085.1",
                "gtdb_species": "s__Nocardia salmonicida",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001612665.1",
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                "num_clustered_genomes": 2,
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            }
        ]
    },
    "_bac2feature": {
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        "cell_length": 0.046,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "coubleae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}