{
    "type": "genome",
    "identifier": "GCF_012396115.1",
    "organism": "Streptomyces somaliensis DSM 40738",
    "title": "Streptomyces somaliensis DSM 40738",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bacterial Special Pathogens Branch (CDC)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_012396115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14517870",
        "wgs_master": "JAAXOU000000000.1",
        "refseq_category": "na",
        "taxid": "1134445",
        "species_taxid": "78355",
        "organism_name": "Streptomyces somaliensis DSM 40738",
        "infraspecific_name": "strain=DSM 40738",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/15",
        "asm_name": "ASM1239611v1",
        "asm_submitter": "Bacterial Special Pathogens Branch (CDC)",
        "gbrs_paired_asm": "GCA_012396115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/396/115/GCF_012396115.1_ASM1239611v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4732004",
        "genome_size_ungapped": "4732004",
        "gc_percent": "74.000000",
        "replicon_count": "0",
        "scaffold_count": "535",
        "contig_count": "535",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_012396115.1-RS_2024_09_08",
        "annotation_date": "2024-09-08",
        "total_gene_count": "4497",
        "protein_coding_gene_count": "4158",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-15",
    "dateModified": "2020-04-15",
    "datePublished": "2020-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces somaliensis DSM 40738"
        ],
        "sample_taxid": [
            "1134445"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Somalia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.262 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.81,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4732004",
        "Number of Sequences": "535",
        "Longest Sequences (bp)": "57576",
        "N50 (bp)": "13906",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "74.0",
        "Number of CDSs": "4015",
        "Average Protein Length": "305.6",
        "Coding Ratio (%)": "77.8",
        "Number of rRNAs": "4",
        "Number of tRNAs": "83",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Streptomyces somaliensis",
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                "accession": "GCA_024349285.1",
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                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1304,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces sudanensis",
                "strain": "strain=SD 504",
                "accession": "GCA_023614315.1",
                "taxid": 436397,
                "species_taxid": 436397,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0271,
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                "total_fragments": 1304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces roseolilacinus",
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                "accession": "GCA_014649335.1",
                "taxid": 66904,
                "species_taxid": 66904,
                "relation_to_type": "type",
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                "matched_fragments": 1066,
                "total_fragments": 1304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fradiae",
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                "accession": "GCA_009834665.1",
                "taxid": 1906,
                "species_taxid": 1906,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.5928,
                "matched_fragments": 1051,
                "total_fragments": 1304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fradiae",
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                "accession": "GCA_008704425.1",
                "taxid": 1906,
                "species_taxid": 1906,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.546,
                "matched_fragments": 1075,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fradiae",
                "strain": "strain=NRRL B-1195",
                "accession": "GCA_002154445.1",
                "taxid": 1906,
                "species_taxid": 1906,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.243,
                "matched_fragments": 770,
                "total_fragments": 1304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lichenis",
                "strain": "strain=LCR6-01",
                "accession": "GCA_023218175.1",
                "taxid": 2306967,
                "species_taxid": 2306967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3731,
                "matched_fragments": 913,
                "total_fragments": 1304,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces formicae",
                "strain": "strain=1H-GS9",
                "accession": "GCA_022647665.1",
                "taxid": 1616117,
                "species_taxid": 1616117,
                "relation_to_type": "type",
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                "ani": 83.1747,
                "matched_fragments": 876,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces harenosi",
                "strain": "strain=PRKS01-65",
                "accession": "GCA_011008945.1",
                "taxid": 2697029,
                "species_taxid": 2697029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2902,
                "matched_fragments": 830,
                "total_fragments": 1304,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.81,
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        "gtdb_result": [
            {
                "accession": "GCA_012396115.1",
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                "ani": 100.0,
                "matched_fragments": 1280,
                "total_fragments": 1304,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_000258595.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000478605.2",
                "gtdb_species": "s__Streptomyces thermolilacinus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "99.82",
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            },
            {
                "accession": "GCF_012927245.1",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": -0.05,
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        "growth_tmp": 29.0,
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        "coding_genes": 7141.289,
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        "tRNA_genes": 67.804,
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        "sporulation": 1.0,
        "motility": 0.049,
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        "bacillus_cell_shape": 0.208,
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        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Streptomyces",
        "somaliensis",
        "DSM",
        "40738"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}