{ "type": "genome", "identifier": "GCF_012396255.1", "organism": "Gordonia sputi", "title": "Gordonia sputi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012396255.1", "bioproject": "PRJNA224116", "biosample": "SAMN14517859", "wgs_master": "JAAXPD000000000.1", "refseq_category": "na", "taxid": "36823", "species_taxid": "36823", "organism_name": "Gordonia sputi", "infraspecific_name": "strain=ATCC 29627", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/15", "asm_name": "ASM1239625v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_012396255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/396/255/GCF_012396255.1_ASM1239625v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4961688", "genome_size_ungapped": "4961688", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012396255.1-RS_2024_09_28", "annotation_date": "2024-09-28", "total_gene_count": "4514", "protein_coding_gene_count": "4368", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-15", "dateModified": "2020-04-15", "datePublished": "2020-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia sputi" ], "sample_taxid": [ "36823" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.366 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4961688", "Number of Sequences": "56", "Longest Sequences (bp)": "765136", "N50 (bp)": "231136", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "4549", "Average Protein Length": "327.4", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia sputi", "strain": "strain=ATCC 29627", "accession": "GCA_012396255.1", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1623, "total_fragments": 1625, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia sputi", "strain": "strain=NBRC 100414", "accession": "GCA_000248055.2", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 99.9732, "matched_fragments": 1563, "total_fragments": 1625, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia aichiensis", "strain": "strain=NBRC 108223", "accession": "GCA_000332975.1", "taxid": 36820, "species_taxid": 36820, "relation_to_type": "type", "validated": true, "ani": 84.672, "matched_fragments": 1244, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia otitidis", "strain": "strain=NBRC 100426", "accession": "GCA_000248075.2", "taxid": 249058, "species_taxid": 249058, "relation_to_type": "type", "validated": true, "ani": 83.9314, "matched_fragments": 1157, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": 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