{ "type": "genome", "identifier": "GCF_012396345.1", "organism": "Nocardiopsis dassonvillei", "title": "Nocardiopsis dassonvillei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012396345.1", "bioproject": "PRJNA224116", "biosample": "SAMN14517853", "wgs_master": "JAAXPH000000000.1", "refseq_category": "na", "taxid": "2014", "species_taxid": "2014", "organism_name": "Nocardiopsis dassonvillei", "infraspecific_name": "strain=ATCC 23218", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/15", "asm_name": "ASM1239634v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_012396345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/396/345/GCF_012396345.1_ASM1239634v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6482410", "genome_size_ungapped": "6482410", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "215", "contig_count": "215", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012396345.1-RS_2024_09_28", "annotation_date": "2024-09-28", "total_gene_count": "5686", "protein_coding_gene_count": "5494", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-15", "dateModified": "2020-04-15", "datePublished": "2020-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis dassonvillei" ], "sample_taxid": [ "2014" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.740 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6482410", "Number of Sequences": "215", "Longest Sequences (bp)": "206734", "N50 (bp)": "52635", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.7", "Number of CDSs": "5566", "Average Protein Length": "318.4", "Coding Ratio (%)": "82.0", "Number of rRNAs": "3", "Number of tRNAs": "73", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2040, "total_fragments": 2051, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=NCTC10488", "accession": "GCA_900638215.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 99.9886, "matched_fragments": 2051, "total_fragments": 2051, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 99.9881, "matched_fragments": 2050, "total_fragments": 2051, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis", "strain": "strain=D1", "accession": "GCA_902825375.1", "taxid": 2580523, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 97.7211, "matched_fragments": 1611, "total_fragments": 2051, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=ATCC 23612", "accession": "GCA_012396365.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 94.7037, "matched_fragments": 1798, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=NBRC 13392", "accession": "GCA_001552695.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 94.6403, "matched_fragments": 1743, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis deserti", "strain": "strain=H13", "accession": "GCA_008638355.1", "taxid": 2605988, "species_taxid": 2605988, "relation_to_type": "type", "validated": true, "ani": 94.4544, "matched_fragments": 1781, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis halotolerans", "strain": "strain=DSM 44410", "accession": "GCA_000341065.1", "taxid": 124252, "species_taxid": 124252, "relation_to_type": "type", "validated": true, "ani": 89.1396, "matched_fragments": 1424, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 88.4256, "matched_fragments": 1504, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 83.7563, "matched_fragments": 1305, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 81.6377, "matched_fragments": 1025, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida alba", "strain": "strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 79.9353, "matched_fragments": 783, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 79.6801, "matched_fragments": 872, "total_fragments": 2051, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, 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4, "status": "-" }, { "accession": "GCA_002529455.1", "gtdb_species": "s__Nocardiopsis fusca", "ani": 93.2628, "matched_fragments": 1694, "total_fragments": 2051, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nocardiopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000341065.1", "gtdb_species": "s__Nocardiopsis halotolerans", "ani": 89.1579, "matched_fragments": 1422, "total_fragments": 2051, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nocardiopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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"GCF_009830945.1", "gtdb_species": "s__Nocardiopsis sp009830945", "ani": 87.5509, "matched_fragments": 1416, "total_fragments": 2051, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nocardiopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900141985.1", "gtdb_species": "s__Nocardiopsis flavescens", "ani": 83.9093, "matched_fragments": 1407, "total_fragments": 2051, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nocardiopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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