{ "type": "genome", "identifier": "GCF_012396365.1", "organism": "Nocardiopsis alborubida", "title": "Nocardiopsis alborubida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012396365.1", "bioproject": "PRJNA224116", "biosample": "SAMN14517854", "wgs_master": "JAAXPG000000000.1", "refseq_category": "na", "taxid": "146802", "species_taxid": "146802", "organism_name": "Nocardiopsis alborubida", "infraspecific_name": "strain=ATCC 23612", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/15", "asm_name": "ASM1239636v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_012396365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/396/365/GCF_012396365.1_ASM1239636v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7158456", "genome_size_ungapped": "7158456", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012396365.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6333", "protein_coding_gene_count": "6171", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-15", "dateModified": "2020-04-15", "datePublished": "2020-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis alborubida" ], "sample_taxid": [ "146802" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 2353, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=NBRC 13392", "accession": "GCA_001552695.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 99.9507, "matched_fragments": 2252, "total_fragments": 2353, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis deserti", "strain": "strain=H13", "accession": "GCA_008638355.1", "taxid": 2605988, "species_taxid": 2605988, "relation_to_type": "type", "validated": true, "ani": 95.8183, "matched_fragments": 1989, "total_fragments": 2353, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 94.6202, "matched_fragments": 1778, "total_fragments": 2353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 94.6048, "matched_fragments": 1900, "total_fragments": 2353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis", "strain": "strain=D1", "accession": "GCA_902825375.1", "taxid": 2580523, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 94.2566, "matched_fragments": 1551, "total_fragments": 2353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 88.4432, "matched_fragments": 1593, "total_fragments": 2353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis quinghaiensis", "strain": "strain=YIM 28A4", "accession": "GCA_008638365.1", "taxid": 464995, "species_taxid": 464995, "relation_to_type": "type", "validated": true, "ani": 88.3585, "matched_fragments": 1484, "total_fragments": 2353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 83.8448, "matched_fragments": 1389, "total_fragments": 2353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 81.6653, "matched_fragments": 1051, "total_fragments": 2353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009830945.1", "gtdb_species": "s__Nocardiopsis sp009830945", "ani": 87.4976, "matched_fragments": 1509, "total_fragments": 2353, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Nocardiopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.359, "cell_length": 0.06, "doubling_h": null, "growth_tmp": 28.671, "optimum_tmp": 30.718, "optimum_ph": 8.126, "genome_size": 6294183.832, "gc_content": 71.028, "coding_genes": 5184.289, "rRNA16S_genes": 5.333, "tRNA_genes": 55.833, 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