{ "type": "genome", "identifier": "GCF_012396395.1", "organism": "Actinomadura latina", "title": "Actinomadura latina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012396395.1", "bioproject": "PRJNA224116", "biosample": "SAMN14517852", "wgs_master": "JAAXPI000000000.1", "refseq_category": "na", "taxid": "163603", "species_taxid": "163603", "organism_name": "Actinomadura latina", "infraspecific_name": "strain=ATCC BAA-277", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/15", "asm_name": "ASM1239639v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_012396395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/396/395/GCF_012396395.1_ASM1239639v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7915849", "genome_size_ungapped": "7915849", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "186", "contig_count": "186", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012396395.1-RS_2024_09_28", "annotation_date": "2024-09-28", "total_gene_count": "7498", "protein_coding_gene_count": "7295", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-15", "dateModified": "2020-04-15", "datePublished": "2020-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura latina" ], "sample_taxid": [ "163603" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Actinomadura meyerae", "strain": "strain=DSM 44715", "accession": "GCA_900188445.1", "taxid": 240840, "species_taxid": 240840, "relation_to_type": "type", "validated": true, "ani": 89.0912, "matched_fragments": 1965, "total_fragments": 2546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura formosensis", "strain": "strain=NBRC 14204", "accession": "GCA_001552155.1", "taxid": 60706, "species_taxid": 60706, "relation_to_type": "type", "validated": true, "ani": 88.8131, "matched_fragments": 1605, "total_fragments": 2546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura mexicana", "strain": "strain=DSM 44485", "accession": "GCA_900188105.1", "taxid": 134959, "species_taxid": 134959, "relation_to_type": "type", "validated": true, "ani": 87.1626, "matched_fragments": 1826, "total_fragments": 2546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura hallensis", "strain": "strain=DSM 45043", "accession": "GCA_006716765.1", "taxid": 337895, "species_taxid": 337895, "relation_to_type": "type", "validated": true, "ani": 85.8034, "matched_fragments": 1652, "total_fragments": 2546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 85.2542, "matched_fragments": 1709, "total_fragments": 2546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 85.0737, "matched_fragments": 1806, "total_fragments": 2546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", 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