{ "type": "genome", "identifier": "GCF_012396435.1", "organism": "Weissella hellenica", "title": "Weissella hellenica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012396435.1", "bioproject": "PRJNA224116", "biosample": "SAMN14517848", "wgs_master": "JAAXPM000000000.1", "refseq_category": "reference genome", "taxid": "46256", "species_taxid": "46256", "organism_name": "Weissella hellenica", "infraspecific_name": "strain=CCUG 33494", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/15", "asm_name": "ASM1239643v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_012396435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/396/435/GCF_012396435.1_ASM1239643v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1818703", "genome_size_ungapped": "1818703", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012396435.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "1820", "protein_coding_gene_count": "1687", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-15", "dateModified": "2020-04-15", "datePublished": "2020-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Weissella hellenica" ], "sample_taxid": [ "46256" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"below_threshold" }, { "organism_name": "Weissella bombi", "strain": "strain=R-53094", "accession": "GCA_900094835.1", "taxid": 1505725, "species_taxid": 1505725, "relation_to_type": "type", "validated": true, "ani": 85.6922, "matched_fragments": 469, "total_fragments": 594, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella bombi", "strain": "strain=DSM 28794", "accession": "GCA_005405505.1", "taxid": 1505725, "species_taxid": 1505725, "relation_to_type": "type", "validated": true, "ani": 85.6787, "matched_fragments": 465, "total_fragments": 594, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005405545.1", "gtdb_species": "s__Weissella hellenica", "ani": 99.9702, "matched_fragments": 581, "total_fragments": 594, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella", 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"psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.384, "coccus_cell_shape": 0.461, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.153, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Weissella", "hellenica" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }