{ "type": "genome", "identifier": "GCF_012396485.1", "organism": "Leuconostoc holzapfelii", "title": "Leuconostoc holzapfelii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012396485.1", "bioproject": "PRJNA224116", "biosample": "SAMN14517846", "wgs_master": "JAAXPO000000000.1", "refseq_category": "na", "taxid": "434464", "species_taxid": "434464", "organism_name": "Leuconostoc holzapfelii", "infraspecific_name": "strain=CCUG 54536", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/15", "asm_name": "ASM1239648v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_012396485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/396/485/GCF_012396485.1_ASM1239648v1", 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"sample_host_location": [ "Ethiopia" ], "sample_host_location_id": [], "data_size": "0.499 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1758434", "Number of Sequences": "18", "Longest Sequences (bp)": "303617", "N50 (bp)": "218908", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.0", "Number of CDSs": "1710", "Average Protein Length": "307.1", "Coding Ratio (%)": "89.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leuconostoc holzapfelii", "strain": "strain=CCUG 54536", "accession": "GCA_012396485.1", "taxid": 434464, "species_taxid": 434464, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 574, 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gelidum subsp. gasicomitatum", "strain": "strain=NBRC 113245", "accession": "GCA_019655955.1", "taxid": 115778, "species_taxid": 1244, "relation_to_type": "type", "validated": true, "ani": 79.3086, "matched_fragments": 173, "total_fragments": 576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fructobacillus parabroussonetiae", "strain": "strain=S1-1", "accession": "GCA_018437265.1", "taxid": 2713174, "species_taxid": 2713174, "relation_to_type": "type", "validated": true, "ani": 78.8796, "matched_fragments": 54, "total_fragments": 576, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leuconostoc carnosum", "strain": "strain=JCM 9695", "accession": "GCA_019655915.1", "taxid": 1252, "species_taxid": 1252, "relation_to_type": "type", "validated": true, "ani": 78.8482, "matched_fragments": 177, "total_fragments": 576, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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