{ "type": "genome", "identifier": "GCF_012396585.1", "organism": "Streptococcus ovuberis", "title": "Streptococcus ovuberis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012396585.1", "bioproject": "PRJNA224116", "biosample": "SAMN14517843", "wgs_master": "JAAXPR000000000.1", "refseq_category": "reference genome", "taxid": "1936207", "species_taxid": "1936207", "organism_name": "Streptococcus ovuberis", "infraspecific_name": "strain=CCUG 69612", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/15", "asm_name": "ASM1239658v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_012396585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/396/585/GCF_012396585.1_ASM1239658v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2467419", "genome_size_ungapped": "2467419", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012396585.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2364", "protein_coding_gene_count": "2193", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-15", "dateModified": "2020-04-15", "datePublished": "2020-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus ovuberis" ], "sample_taxid": [ "1936207" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.705 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2467419", "Number of Sequences": "48", "Longest Sequences (bp)": "264996", "N50 (bp)": "84052", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.8", "Number of CDSs": "2273", "Average Protein Length": "300.8", "Coding Ratio (%)": "83.1", "Number of rRNAs": "4", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus ovuberis", "strain": "strain=CCUG 69612", "accession": "GCA_012396585.1", "taxid": 1936207, "species_taxid": 1936207, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 78.3751, "matched_fragments": 74, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 78.3677, "matched_fragments": 76, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=ATCC 15912", "accession": "GCA_000164675.2", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3042, "matched_fragments": 80, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 78.2716, "matched_fragments": 69, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sinensis", "strain": "strain=HKU4", "accession": "GCA_000767835.1", "taxid": 176090, "species_taxid": 176090, "relation_to_type": "type", "validated": true, "ani": 78.2263, "matched_fragments": 79, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=NCTC12854", "accession": "GCA_900459355.1", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1578, "matched_fragments": 77, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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