{
    "type": "genome",
    "identifier": "GCF_012516475.1",
    "organism": "Parasphingorhabdus halotolerans",
    "title": "Parasphingorhabdus halotolerans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jeju National University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_012516475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14564124",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2725558",
        "species_taxid": "2725558",
        "organism_name": "Parasphingorhabdus halotolerans",
        "infraspecific_name": "strain=JK6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/19",
        "asm_name": "ASM1251647v1",
        "asm_submitter": "Jeju National University",
        "gbrs_paired_asm": "GCA_012516475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/516/475/GCF_012516475.1_ASM1251647v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3269179",
        "genome_size_ungapped": "3269179",
        "gc_percent": "53.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_012516475.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "3240",
        "protein_coding_gene_count": "3109",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-19",
    "dateModified": "2020-04-19",
    "datePublished": "2020-04-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parasphingorhabdus halotolerans"
        ],
        "sample_taxid": [
            "2725558"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Jeju"
        ],
        "sample_host_location_id": [],
        "data_size": "0.927 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3269179",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3269179",
        "N50 (bp)": "3269179",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.0",
        "Number of CDSs": "3213",
        "Average Protein Length": "306.0",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parasphingorhabdus halotolerans",
                "strain": "strain=JK6",
                "accession": "GCA_012516475.1",
                "taxid": 2725558,
                "species_taxid": 2725558,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1089,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parasphingorhabdus flavimaris",
                "strain": "strain=SW-151",
                "accession": "GCA_013371215.1",
                "taxid": 266812,
                "species_taxid": 266812,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5732,
                "matched_fragments": 391,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parasphingorhabdus cellanae",
                "strain": "strain=JHSY0214",
                "accession": "GCA_017498565.1",
                "taxid": 2806553,
                "species_taxid": 2806553,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1939,
                "matched_fragments": 344,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parasphingorhabdus litoris",
                "strain": "strain=DSM 22379",
                "accession": "GCA_020906275.1",
                "taxid": 394733,
                "species_taxid": 394733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9538,
                "matched_fragments": 336,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parasphingorhabdus marina",
                "strain": "strain=DSM 22363",
                "accession": "GCA_900128895.1",
                "taxid": 394732,
                "species_taxid": 394732,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7753,
                "matched_fragments": 296,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas suaedae",
                "strain": "strain=XS-10",
                "accession": "GCA_007833215.1",
                "taxid": 2599297,
                "species_taxid": 2599297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6062,
                "matched_fragments": 56,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parasphingopyxis marina",
                "strain": "strain=GrpM-11",
                "accession": "GCA_014237875.1",
                "taxid": 2761622,
                "species_taxid": 2761622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6054,
                "matched_fragments": 73,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisediminimonas profunda",
                "strain": "strain=DS48-3",
                "accession": "GCA_019443285.1",
                "taxid": 1550733,
                "species_taxid": 1550733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5906,
                "matched_fragments": 50,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastomonas fulva",
                "strain": "strain=T2",
                "accession": "GCA_003431825.1",
                "taxid": 1550728,
                "species_taxid": 1550728,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5389,
                "matched_fragments": 112,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingorhabdus pulchriflava",
                "strain": "strain=GY_G",
                "accession": "GCA_003367235.1",
                "taxid": 2292257,
                "species_taxid": 2292257,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.517,
                "matched_fragments": 92,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Novosphingopyxis baekryungensis",
                "strain": "strain=DSM 16222",
                "accession": "GCA_000420305.1",
                "taxid": 279369,
                "species_taxid": 279369,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4987,
                "matched_fragments": 96,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastomonas aquatica",
                "strain": "strain=CGMCC 1.12851",
                "accession": "GCA_014639875.1",
                "taxid": 1510276,
                "species_taxid": 1510276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2109,
                "matched_fragments": 96,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas changnyeongensis",
                "strain": "strain=C33",
                "accession": "GCA_009913435.1",
                "taxid": 2698679,
                "species_taxid": 2698679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1454,
                "matched_fragments": 71,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas cavernae",
                "strain": "strain=K2R01-6",
                "accession": "GCA_003590775.1",
                "taxid": 2320861,
                "species_taxid": 2320861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1197,
                "matched_fragments": 73,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Novosphingobium lentum",
                "strain": "strain=NBRC 107847",
                "accession": "GCA_001590965.1",
                "taxid": 145287,
                "species_taxid": 145287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0632,
                "matched_fragments": 76,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizorhabdus histidinilytica",
                "strain": "strain=UM2",
                "accession": "GCA_900167915.1",
                "taxid": 439228,
                "species_taxid": 439228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8654,
                "matched_fragments": 50,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_012516475.1",
                "gtdb_species": "s__Parasphingorhabdus sp012516475",
                "ani": 100.0,
                "matched_fragments": 1089,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001650955.1",
                "gtdb_species": "s__Parasphingorhabdus sp001650955",
                "ani": 78.4823,
                "matched_fragments": 359,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001586275.1",
                "gtdb_species": "s__Parasphingorhabdus sp001586275",
                "ani": 78.4123,
                "matched_fragments": 379,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002218195.1",
                "gtdb_species": "s__Parasphingorhabdus sp002218195",
                "ani": 78.3558,
                "matched_fragments": 364,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002354635.1",
                "gtdb_species": "s__Parasphingorhabdus sp002354635",
                "ani": 78.3441,
                "matched_fragments": 378,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002733865.1",
                "gtdb_species": "s__Parasphingorhabdus sp002733865",
                "ani": 78.3231,
                "matched_fragments": 349,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002776575.1",
                "gtdb_species": "s__Parasphingorhabdus sp002776575",
                "ani": 78.2354,
                "matched_fragments": 398,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.08",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017498565.1",
                "gtdb_species": "s__Parasphingorhabdus sp017498565",
                "ani": 78.187,
                "matched_fragments": 344,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002783865.1",
                "gtdb_species": "s__Parasphingorhabdus sp002783865",
                "ani": 78.1689,
                "matched_fragments": 311,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900258045.1",
                "gtdb_species": "s__Parasphingorhabdus sp900258045",
                "ani": 78.0364,
                "matched_fragments": 331,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900149705.1",
                "gtdb_species": "s__Parasphingorhabdus sp900149705",
                "ani": 77.9296,
                "matched_fragments": 328,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015478735.1",
                "gtdb_species": "s__Parasphingorhabdus sp015478735",
                "ani": 77.7301,
                "matched_fragments": 248,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Parasphingorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005518185.1",
                "gtdb_species": "s__Chakrabartia godavariana",
                "ani": 76.5725,
                "matched_fragments": 62,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Chakrabartia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003431825.1",
                "gtdb_species": "s__Blastomonas fulva",
                "ani": 76.5389,
                "matched_fragments": 112,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "97.97",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003201955.1",
                "gtdb_species": "s__Blastomonas natatoria",
                "ani": 76.3552,
                "matched_fragments": 106,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Parasphingorhabdus",
        "halotolerans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}