{ "type": "genome", "identifier": "GCF_012641515.1", "organism": "Nesterenkonia sedimenti", "title": "Nesterenkonia sedimenti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012641515.1", "bioproject": "PRJNA224116", "biosample": "SAMN14599991", "wgs_master": "JABAHY000000000.1", "refseq_category": "reference genome", "taxid": "1463632", "species_taxid": "1463632", "organism_name": "Nesterenkonia sedimenti", "infraspecific_name": "strain=MY13", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/21", "asm_name": "ASM1264151v1", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_012641515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/641/515/GCF_012641515.1_ASM1264151v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3113995", "genome_size_ungapped": "3113995", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012641515.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3017", "protein_coding_gene_count": "2889", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-21", "dateModified": "2020-04-21", "datePublished": "2020-04-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Nesterenkonia sedimenti" ], "sample_taxid": [ "1463632" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "0.870 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3113995", "Number of Sequences": "64", "Longest Sequences (bp)": "583387", "N50 (bp)": "211796", "Gap Ratio (%)": "0.000482", "GCcontent (%)": "63.1", "Number of CDSs": "2943", "Average Protein Length": "320.1", "Coding Ratio (%)": "90.7", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia sedimenti", "strain": "strain=MY13", "accession": "GCA_012641515.1", "taxid": 1463632, "species_taxid": 1463632, 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1012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Garicola koreensis", "strain": "strain=DSM 28238", "accession": "GCA_014195445.1", "taxid": 1262554, "species_taxid": 1262554, "relation_to_type": "type", "validated": true, "ani": 79.3942, "matched_fragments": 300, "total_fragments": 1012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alba", "strain": "strain=DSM 19423", "accession": "GCA_000421745.1", "taxid": 515814, "species_taxid": 515814, "relation_to_type": "type", "validated": true, "ani": 78.9687, "matched_fragments": 276, "total_fragments": 1012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia halotolerans", "strain": "strain=DSM 15474", "accession": "GCA_014874065.1", "taxid": 225325, "species_taxid": 225325, "relation_to_type": "type", "validated": true, "ani": 78.3479, "matched_fragments": 286, "total_fragments": 1012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia natronophila", "strain": "strain=M8", "accession": "GCA_003595215.1", "taxid": 2174932, "species_taxid": 2174932, "relation_to_type": "type", "validated": true, "ani": 78.2578, "matched_fragments": 245, "total_fragments": 1012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_021729215.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 77.2942, "matched_fragments": 134, "total_fragments": 1012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania zhangjianzhongii", "strain": "strain=HY168", "accession": "GCA_008000995.1", "taxid": 2603206, "species_taxid": 2603206, "relation_to_type": "type", "validated": true, "ani": 77.0247, "matched_fragments": 92, "total_fragments": 1012, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycetocola spongiae", "strain": 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