{ "type": "genome", "identifier": "GCF_012641725.1", "organism": "Pseudoalteromonas maricaloris", "title": "Pseudoalteromonas maricaloris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Technical University of Denmark", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012641725.1", "bioproject": "PRJNA224116", "biosample": "SAMN12930369", "wgs_master": "WEIA00000000.1", "refseq_category": "na", "taxid": "184924", "species_taxid": "184924", "organism_name": "Pseudoalteromonas maricaloris", "infraspecific_name": "strain=LMG 19692", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/21", "asm_name": "ASM1264172v1", "asm_submitter": "Technical University of Denmark", "gbrs_paired_asm": "GCA_012641725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/641/725/GCF_012641725.1_ASM1264172v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5584065", "genome_size_ungapped": "5584065", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "116", "contig_count": "116", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012641725.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "4981", "protein_coding_gene_count": "4777", "non_coding_gene_count": "125", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-21", "dateModified": "2020-04-21", "datePublished": "2020-04-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas maricaloris" ], "sample_taxid": [ "184924" ], "sample_host_organism": [ "Fascaplysinopsis reticulata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Coral Sea" ], "sample_host_location_id": [], "data_size": "1.592 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5584065", "Number of Sequences": "116", "Longest Sequences (bp)": "762435", "N50 (bp)": "266291", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "4774", "Average Protein Length": "338.1", "Coding Ratio (%)": "86.7", "Number of rRNAs": "8", "Number of tRNAs": "101", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas flavipulchra", "strain": "strain=LMG 20361", "accession": "GCA_014596995.1", "taxid": 137779, "species_taxid": 137779, "relation_to_type": "suspected-type", "validated": true, "ani": 98.7777, "matched_fragments": 1687, "total_fragments": 1820, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas flavipulchra", "strain": "strain=NCIMB 2033", "accession": "GCA_014858715.1", "taxid": 137779, "species_taxid": 137779, "relation_to_type": "suspected-type", "validated": true, "ani": 98.6956, "matched_fragments": 1701, "total_fragments": 1820, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas piscicida", "strain": "strain=ATCC 15057", "accession": "GCA_000382005.1", "taxid": 43662, "species_taxid": 43662, "relation_to_type": "type", "validated": true, "ani": 96.1635, "matched_fragments": 1542, "total_fragments": 1820, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas piscicida", "strain": "strain=JCM 20779", "accession": "GCA_000238315.4", "taxid": 43662, "species_taxid": 43662, "relation_to_type": "type", "validated": true, "ani": 96.1366, "matched_fragments": 1567, "total_fragments": 1820, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudoalteromonas galatheae", "strain": "strain=S4498", "accession": "GCA_005886105.2", "taxid": 579562, "species_taxid": 579562, "relation_to_type": "type", "validated": true, "ani": 92.7261, "matched_fragments": 1459, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella ulleungensis", "strain": "strain=KCTC 62130", "accession": "GCA_023283965.1", "taxid": 2282699, "species_taxid": 2282699, "relation_to_type": "type", "validated": true, "ani": 76.7095, "matched_fragments": 52, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio algicola", "strain": "strain=SM1977", "accession": "GCA_009601765.2", "taxid": 2662262, "species_taxid": 2662262, "relation_to_type": "type", "validated": true, "ani": 76.4854, "matched_fragments": 54, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=LMG 21408", "accession": "GCA_023283535.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 76.1902, "matched_fragments": 65, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000814665.1", "gtdb_species": "s__Pseudoalteromonas elyakovii", "ani": 98.7612, "matched_fragments": 1703, "total_fragments": 1820, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 96.0982, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "inconclusive" }, { "accession": 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"status": "-" }, { "accession": "GCF_005886535.1", "gtdb_species": "s__Pseudoalteromonas sp005886535", "ani": 94.3665, "matched_fragments": 1412, "total_fragments": 1820, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002208135.1", "gtdb_species": "s__Pseudoalteromonas piscicida_A", "ani": 93.5239, "matched_fragments": 1528, "total_fragments": 1820, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.241, "cell_length": 0.166, "doubling_h": 0.348, "growth_tmp": 28.0, "optimum_tmp": 24.901, "optimum_ph": 7.588, "genome_size": 4777827.727, "gc_content": 41.108, "coding_genes": 3972.54, "rRNA16S_genes": 8.705, "tRNA_genes": 104.429, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.941, "range_salinity": 0.8, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoalteromonas", "maricaloris" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }