{ "type": "genome", "identifier": "GCF_012767755.2", "organism": "Pseudomonas tohonis", "title": "Pseudomonas tohonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Toho University Medical Center Omori Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012767755.2", "bioproject": "PRJNA224116", "biosample": "SAMD00220017", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2725477", "species_taxid": "2725477", "organism_name": "Pseudomonas tohonis", "infraspecific_name": "strain=TUM18999", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/01", "asm_name": "ASM1276775v2", "asm_submitter": "Toho University Medical Center Omori Hospital", "gbrs_paired_asm": "GCA_012767755.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/767/755/GCF_012767755.2_ASM1276775v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6826062", "genome_size_ungapped": "6826062", "gc_percent": "66.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012767755.2-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "6222", "protein_coding_gene_count": "6093", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-01", "dateModified": "2020-06-01", "datePublished": "2020-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas tohonis" ], "sample_taxid": [ "2725477" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.859 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6826062", "Number of Sequences": "1", "Longest Sequences (bp)": "6826062", "N50 (bp)": "6826062", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "6175", "Average Protein Length": "326.9", "Coding Ratio (%)": "88.7", "Number of rRNAs": "12", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas tohonis", "strain": "strain=TUM18999", "accession": "GCA_012767755.2", "taxid": 2725477, "species_taxid": 2725477, 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85.1429, "matched_fragments": 1277, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 84.436, "matched_fragments": 1096, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 84.2009, "matched_fragments": 1320, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 84.1423, "matched_fragments": 1082, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.8559, "matched_fragments": 1012, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=JCM 21621", "accession": "GCA_900103845.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 83.4908, "matched_fragments": 1101, "total_fragments": 2275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=NBRC 103047", "accession": "GCA_002091655.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 83.4885, "matched_fragments": 1113, "total_fragments": 2275, "ani_threshold": 95, "status": 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