{
    "type": "genome",
    "identifier": "GCF_012844305.1",
    "organism": "Flammeovirga aprica JL-4",
    "title": "Flammeovirga aprica JL-4",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Third Institute of Oceanography China",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_012844305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14603964",
        "wgs_master": "JABANE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "694437",
        "species_taxid": "29528",
        "organism_name": "Flammeovirga aprica JL-4",
        "infraspecific_name": "strain=ATCC 23126",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/25",
        "asm_name": "ASM1284430v1",
        "asm_submitter": "Third Institute of Oceanography China",
        "gbrs_paired_asm": "GCA_012844305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/844/305/GCF_012844305.1_ASM1284430v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9310590",
        "genome_size_ungapped": "9309860",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "462",
        "contig_count": "462",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_012844305.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "7019",
        "protein_coding_gene_count": "6881",
        "non_coding_gene_count": "89",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-25",
    "dateModified": "2020-04-25",
    "datePublished": "2020-04-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Flammeovirga aprica JL-4"
        ],
        "sample_taxid": [
            "694437"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Hawaii, Kailua"
        ],
        "sample_host_location_id": [],
        "data_size": "2.626 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "9310590",
        "Number of Sequences": "462",
        "Longest Sequences (bp)": "173371",
        "N50 (bp)": "68398",
        "Gap Ratio (%)": "0.007841",
        "GCcontent (%)": "35.2",
        "Number of CDSs": "6685",
        "Average Protein Length": "386.9",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            {
                "organism_name": "Flammeovirga agarivorans",
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                "accession": "GCA_012641475.1",
                "taxid": 2726742,
                "species_taxid": 2726742,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7172,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Flammeovirga kamogawensis",
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                "species_taxid": 373891,
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                "ani": 78.3181,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flammeovirga pectinis",
                "strain": "strain=L12M1",
                "accession": "GCA_003970675.1",
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                "validated": true,
                "ani": 78.3059,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flammeovirga kamogawensis",
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                "accession": "GCA_018736065.1",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flammeovirga pacifica",
                "strain": "strain=WPAGA1",
                "accession": "GCA_000807855.2",
                "taxid": 915059,
                "species_taxid": 915059,
                "relation_to_type": "type",
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                "ani": 78.2594,
                "matched_fragments": 572,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 2.08,
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                "accession": "GCF_012844305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Flammeovirgaceae;g__Flammeovirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001583495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Flammeovirgaceae;g__Flammeovirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_000812565.1",
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                "ani": 85.0856,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Flammeovirgaceae;g__Flammeovirga",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014534745.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "100.00",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.302,
        "cell_length": 0.23,
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        "growth_tmp": 25.0,
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        "genome_size": 6485964.0,
        "gc_content": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Flammeovirga",
        "aprica",
        "JL-4"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}