{ "type": "genome", "identifier": "GCF_012849055.1", "organism": "Spirosoma rhododendri", "title": "Spirosoma rhododendri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012849055.1", "bioproject": "PRJNA224116", "biosample": "SAMN14609722", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2728024", "species_taxid": "2728024", "organism_name": "Spirosoma rhododendri", "infraspecific_name": "strain=CJU-R4", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1284905v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_012849055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/849/055/GCF_012849055.1_ASM1284905v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6049537", "genome_size_ungapped": "6049537", "gc_percent": "55.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012849055.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5224", "protein_coding_gene_count": "5026", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma rhododendri" ], "sample_taxid": [ "2728024" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Uljin-gun" ], "sample_host_location_id": [], "data_size": "1.711 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6049537", "Number of Sequences": "3", "Longest Sequences (bp)": "5761753", "N50 (bp)": "5761753", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.2", "Number of CDSs": "5275", "Average Protein Length": "333.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 81.9769, "matched_fragments": 1336, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma montaniterrae", "strain": "strain=DY10", "accession": "GCA_001988955.1", "taxid": 1178516, "species_taxid": 1178516, "relation_to_type": "type", "validated": true, "ani": 77.5829, "matched_fragments": 497, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.5546, "matched_fragments": 490, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 77.4854, "matched_fragments": 484, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 77.4639, "matched_fragments": 475, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 77.3877, "matched_fragments": 533, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 77.2307, "matched_fragments": 403, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 77.1985, "matched_fragments": 406, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.1477, "matched_fragments": 418, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 77.1458, "matched_fragments": 341, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma montanum", "strain": "strain=HYT19", "accession": "GCA_003583365.1", "taxid": 2305895, "species_taxid": 2305895, "relation_to_type": "type", "validated": true, "ani": 77.1084, "matched_fragments": 446, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 77.0248, "matched_fragments": 356, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.0244, "matched_fragments": 320, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 76.966, "matched_fragments": 329, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 76.9451, "matched_fragments": 357, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 76.8497, "matched_fragments": 380, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aquatilis", "strain": "strain=HMF5036", "accession": "GCA_017353255.1", "taxid": 2817059, "species_taxid": 2817059, "relation_to_type": "type", "validated": true, "ani": 76.6964, "matched_fragments": 360, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella rubiginis", "strain": "strain=HMF5335", "accession": "GCA_017353185.1", "taxid": 2817060, "species_taxid": 2817060, "relation_to_type": "type", "validated": true, "ani": 76.5864, "matched_fragments": 302, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 75.6752, "matched_fragments": 61, "total_fragments": 2015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 75.3805, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Spirosoma", "rhododendri" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }