{ "type": "genome", "identifier": "GCF_012849095.1", "organism": "Cohnella herbarum", "title": "Cohnella herbarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012849095.1", "bioproject": "PRJNA224116", "biosample": "SAMN14609721", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2728023", "species_taxid": "2728023", "organism_name": "Cohnella herbarum", "infraspecific_name": "strain=MFER-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1284909v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_012849095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/849/095/GCF_012849095.1_ASM1284909v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8522788", "genome_size_ungapped": "8522788", "gc_percent": "50.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012849095.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "7230", "protein_coding_gene_count": "7027", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella herbarum" ], "sample_taxid": [ "2728023" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Goseong-gun" ], "sample_host_location_id": [], "data_size": "2.413 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8522788", "Number of Sequences": "2", "Longest Sequences (bp)": "8348250", "N50 (bp)": "8348250", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.6", "Number of CDSs": "7362", "Average Protein Length": "341.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "21", "Number of tRNAs": "71", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella herbarum", "strain": "strain=MFER-1", "accession": "GCA_012849095.1", "taxid": 2728023, "species_taxid": 2728023, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2839, "total_fragments": 2840, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cohnella cholangitidis", "strain": "strain=1605-214", "accession": "GCA_014107495.1", "taxid": 2598458, "species_taxid": 2598458, "relation_to_type": "type", "validated": true, "ani": 81.318, "matched_fragments": 1068, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella luojiensis", "strain": "strain=CCTCC AB 208254", "accession": "GCA_004564235.1", "taxid": 652876, "species_taxid": 652876, "relation_to_type": "type", "validated": true, "ani": 80.0785, "matched_fragments": 658, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella endophytica", "strain": "strain=M2MS4P-1", "accession": "GCA_003628305.1", "taxid": 2419778, "species_taxid": 2419778, "relation_to_type": "type", "validated": true, "ani": 79.9985, "matched_fragments": 720, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lupini", "strain": "strain=CECT 8236", "accession": "GCA_003386205.1", "taxid": 1294267, "species_taxid": 1294267, "relation_to_type": "type", "validated": true, "ani": 79.9053, "matched_fragments": 735, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella abietis", "strain": "strain=HS21", "accession": "GCA_004295585.1", "taxid": 2507935, "species_taxid": 2507935, "relation_to_type": "type", "validated": true, "ani": 79.4354, "matched_fragments": 520, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella terricola", "strain": "strain=G13", "accession": "GCA_007786475.1", "taxid": 1289167, "species_taxid": 1289167, "relation_to_type": "type", "validated": true, "ani": 79.1218, "matched_fragments": 601, "total_fragments": 2840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella panacarvi", "strain": "strain=Gsoil 349", 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