{ "type": "genome", "identifier": "GCF_012849215.1", "organism": "Mucilaginibacter robiniae", "title": "Mucilaginibacter robiniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012849215.1", "bioproject": "PRJNA224116", "biosample": "SAMN14609720", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2728022", "species_taxid": "2728022", "organism_name": "Mucilaginibacter robiniae", "infraspecific_name": "strain=F39-2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1284921v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_012849215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/849/215/GCF_012849215.1_ASM1284921v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4984039", "genome_size_ungapped": "4984039", "gc_percent": "41.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012849215.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "4401", "protein_coding_gene_count": "4314", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter robiniae" ], "sample_taxid": [ "2728022" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Iksan-si" ], "sample_host_location_id": [], "data_size": "1.410 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4984039", "Number of Sequences": "2", "Longest Sequences (bp)": "4896009", "N50 (bp)": "4896009", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.4", "Number of CDSs": "4290", "Average Protein Length": "338.9", "Coding Ratio (%)": "87.5", "Number of rRNAs": "9", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter robiniae", "strain": "strain=F39-2", "accession": "GCA_012849215.1", "taxid": 2728022, "species_taxid": 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203, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 77.3337, "matched_fragments": 186, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.2622, "matched_fragments": 157, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 77.1289, "matched_fragments": 166, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.0305, "matched_fragments": 169, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter polaris", "strain": "strain=RP-3-22", "accession": "GCA_005116505.1", "taxid": 2571273, "species_taxid": 2571273, "relation_to_type": "type", "validated": true, "ani": 77.0292, "matched_fragments": 60, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrenus", "strain": "strain=ZH6", "accession": "GCA_003432065.1", "taxid": 2482727, "species_taxid": 2482727, "relation_to_type": "type", "validated": true, "ani": 77.0208, "matched_fragments": 130, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 77.0104, "matched_fragments": 167, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter boryungensis", "strain": "strain=KCTC 23157", "accession": "GCA_015221995.1", "taxid": 768480, "species_taxid": 768480, "relation_to_type": "type", "validated": true, "ani": 76.951, "matched_fragments": 178, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 76.893, "matched_fragments": 163, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 76.8446, "matched_fragments": 185, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pankratovii", "strain": "strain=ZT4R22", "accession": "GCA_014773265.1", "taxid": 2772110, "species_taxid": 2772110, "relation_to_type": "type", "validated": true, "ani": 76.8327, "matched_fragments": 150, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 76.7689, "matched_fragments": 141, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "robiniae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }