{ "type": "genome", "identifier": "GCF_012910885.1", "organism": "Azoarcus taiwanensis", "title": "Azoarcus taiwanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The James Hutton Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012910885.1", "bioproject": "PRJNA224116", "biosample": "SAMN13519749", "wgs_master": "WTVM00000000.1", "refseq_category": "reference genome", "taxid": "666964", "species_taxid": "666964", "organism_name": "Azoarcus taiwanensis", "infraspecific_name": "strain=NSC3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1291088v1", "asm_submitter": "The James Hutton Institute", "gbrs_paired_asm": "GCA_012910885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/910/885/GCF_012910885.1_ASM1291088v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4215846", "genome_size_ungapped": "4215846", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "330", "contig_count": "330", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012910885.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4128", "protein_coding_gene_count": "3968", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Azoarcus taiwanensis" ], "sample_taxid": [ "666964" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Yang-Ming Mountain, New Taipei City" ], "sample_host_location_id": [], "data_size": "1.192 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4215846", "Number of Sequences": "330", "Longest Sequences (bp)": "93106", "N50 (bp)": "26885", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.8", "Number of CDSs": "3722", "Average Protein Length": "314.7", "Coding Ratio (%)": "83.3", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 80.0114, "matched_fragments": 415, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 79.994, "matched_fragments": 416, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 79.7806, "matched_fragments": 420, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenolivorans", "strain": "strain=ZV1C", "accession": "GCA_001696715.1", "taxid": 1792543, "species_taxid": 1792543, "relation_to_type": "type", "validated": true, "ani": 79.6462, "matched_fragments": 368, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB1", "accession": "GCA_001922305.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 79.4989, "matched_fragments": 397, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB-1", "accession": "GCA_900108255.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 79.4782, "matched_fragments": 383, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera humireducens", "strain": "strain=SgZ-1", "accession": "GCA_001051995.2", "taxid": 1134435, "species_taxid": 1134435, "relation_to_type": "type", "validated": true, "ani": 79.4477, "matched_fragments": 393, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aromatica", "strain": "strain=K172", "accession": "GCA_003030465.1", "taxid": 59405, "species_taxid": 59405, "relation_to_type": "type", "validated": true, "ani": 79.4196, "matched_fragments": 375, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera propionica", "strain": "strain=KNDSS-Mac4", "accession": "GCA_002245655.1", "taxid": 2019431, "species_taxid": 2019431, "relation_to_type": "type", "validated": true, "ani": 79.3239, "matched_fragments": 395, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 79.2663, "matched_fragments": 419, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum bremense", "strain": "strain=PbN1", "accession": "GCA_017894365.1", "taxid": 76115, "species_taxid": 76115, "relation_to_type": "type", "validated": true, "ani": 79.257, "matched_fragments": 359, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 79.1166, "matched_fragments": 356, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 79.0341, "matched_fragments": 375, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 78.9093, "matched_fragments": 404, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluvorans", "strain": "strain=Td21", "accession": "GCA_012910905.1", "taxid": 92002, "species_taxid": 92002, "relation_to_type": "type", "validated": true, "ani": 78.7522, "matched_fragments": 375, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_012910985.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 78.734, "matched_fragments": 366, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_017894385.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 78.6907, "matched_fragments": 369, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum aromaticum", "strain": "strain=EbN1", "accession": "GCA_000025965.1", "taxid": 551760, "species_taxid": 551760, "relation_to_type": "type", "validated": true, "ani": 78.6766, "matched_fragments": 343, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum anaerobium", "strain": "strain=LuFRes1", "accession": "GCA_012910705.2", "taxid": 182180, "species_taxid": 182180, "relation_to_type": "type", "validated": true, "ani": 78.6149, "matched_fragments": 330, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum diolicum", "strain": "strain=22Lin", "accession": "GCA_012910955.1", "taxid": 75796, "species_taxid": 75796, "relation_to_type": "type", "validated": true, "ani": 78.6065, "matched_fragments": 331, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum buckelii", "strain": "strain=U120", "accession": "GCA_012910785.2", "taxid": 200254, "species_taxid": 200254, "relation_to_type": "type", "validated": true, "ani": 78.5185, "matched_fragments": 304, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter mangrovi", "strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 78.4737, "matched_fragments": 310, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter aestuarii", "strain": "strain=H1-1-2A", "accession": "GCA_017309585.1", "taxid": 2815343, "species_taxid": 2815343, "relation_to_type": "type", "validated": true, "ani": 78.047, "matched_fragments": 219, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera hydrothermalis", "strain": "strain=GD-2", "accession": "GCA_003345255.1", "taxid": 2184083, "species_taxid": 2184083, "relation_to_type": "type", "validated": true, "ani": 77.9343, "matched_fragments": 256, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter luteus", "strain": "strain=DSM 27258", "accession": "GCA_004345725.1", "taxid": 1452487, "species_taxid": 1452487, "relation_to_type": "type", "validated": true, "ani": 77.4301, "matched_fragments": 159, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uliginosibacterium aquaticum", "strain": "strain=IMCC34675", "accession": "GCA_012972705.2", "taxid": 2731212, "species_taxid": 2731212, "relation_to_type": "type", "validated": true, "ani": 76.8318, "matched_fragments": 159, "total_fragments": 1258, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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"gtdb_species": "s__Thauera aminoaromatica", "ani": 79.9623, "matched_fragments": 418, "total_fragments": 1258, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001591165.1", "gtdb_species": "s__Thauera butanivorans", "ani": 79.7648, "matched_fragments": 420, "total_fragments": 1258, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014489115.1", "gtdb_species": "s__Thauera_A sp014489115", 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