{ "type": "genome", "identifier": "GCF_012910955.1", "organism": "Aromatoleum diolicum", "title": "Aromatoleum diolicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The James Hutton Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012910955.1", "bioproject": "PRJNA224116", "biosample": "SAMN13519793", "wgs_master": "WTVQ00000000.1", "refseq_category": "reference genome", "taxid": "75796", "species_taxid": "75796", "organism_name": "Aromatoleum diolicum", "infraspecific_name": "strain=22Lin", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1291095v1", "asm_submitter": "The James Hutton Institute", "gbrs_paired_asm": "GCA_012910955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/910/955/GCF_012910955.1_ASM1291095v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5146275", "genome_size_ungapped": "5146275", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "146", "contig_count": "146", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012910955.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4756", "protein_coding_gene_count": "4635", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Aromatoleum diolicum" ], "sample_taxid": [ "75796" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Bremen" ], "sample_host_location_id": [], "data_size": "1.437 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5146275", "Number of Sequences": "146", "Longest Sequences (bp)": "251187", "N50 (bp)": "104601", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "4602", "Average Protein Length": "328.4", "Coding Ratio (%)": "88.1", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aromatoleum diolicum", "strain": "strain=22Lin", "accession": "GCA_012910955.1", "taxid": 75796, "species_taxid": 75796, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1656, "total_fragments": 1660, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 84.2914, "matched_fragments": 1132, "total_fragments": 1660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 83.7227, "matched_fragments": 1049, "total_fragments": 1660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluvorans", "strain": "strain=Td21", "accession": "GCA_012910905.1", "taxid": 92002, "species_taxid": 92002, "relation_to_type": "type", "validated": true, "ani": 83.4834, "matched_fragments": 896, "total_fragments": 1660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum evansii", "strain": 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