{ "type": "genome", "identifier": "GCF_012911565.1", "organism": "Flavobacterium silvaticum", "title": "Flavobacterium silvaticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung ang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012911565.1", "bioproject": "PRJNA224116", "biosample": "SAMN14209420", "wgs_master": "JAAMPU000000000.1", "refseq_category": "reference genome", "taxid": "1852020", "species_taxid": "1852020", "organism_name": "Flavobacterium silvaticum", "infraspecific_name": "strain=SE-s28", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1291156v1", "asm_submitter": "Chung ang university", "gbrs_paired_asm": "GCA_012911565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/911/565/GCF_012911565.1_ASM1291156v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3771472", "genome_size_ungapped": "3771472", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "108", "contig_count": "108", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012911565.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3345", "protein_coding_gene_count": "3264", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium silvaticum" ], "sample_taxid": [ "1852020" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju island" ], "sample_host_location_id": [], "data_size": "1.069 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3771472", "Number of Sequences": "108", "Longest Sequences (bp)": "558144", "N50 (bp)": "243607", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.3", "Number of CDSs": "3184", "Average Protein Length": "344.5", "Coding Ratio (%)": "87.2", "Number of rRNAs": "4", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium silvaticum", "strain": "strain=SE-s28", "accession": "GCA_012911565.1", "taxid": 1852020, "species_taxid": 1852020, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1232, "total_fragments": 1233, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium agri", "strain": "strain=MAH-1", "accession": "GCA_013401995.1", "taxid": 2743471, "species_taxid": 2743471, "relation_to_type": "type", "validated": true, "ani": 77.9618, "matched_fragments": 336, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium agri", "strain": "strain=MAH-1", "accession": "GCA_013366395.1", "taxid": 2743471, "species_taxid": 2743471, "relation_to_type": "type", "validated": true, "ani": 77.9603, "matched_fragments": 336, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium magnum", "strain": "strain=HYN0048", "accession": "GCA_003055625.1", "taxid": 2162713, "species_taxid": 2162713, "relation_to_type": "type", "validated": true, "ani": 77.4507, "matched_fragments": 94, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium orientale", "strain": "strain=CGMCC 1.12506", "accession": "GCA_014638005.1", "taxid": 1756020, "species_taxid": 1756020, "relation_to_type": "type", "validated": true, "ani": 77.2275, "matched_fragments": 55, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pallidum", "strain": "strain=HYN0049", "accession": "GCA_003097535.1", "taxid": 2172098, "species_taxid": 2172098, "relation_to_type": "type", "validated": true, "ani": 77.1068, "matched_fragments": 135, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lotistagni", "strain": "strain=CYK-4", "accession": "GCA_011392125.1", "taxid": 2709660, "species_taxid": 2709660, "relation_to_type": "type", "validated": true, "ani": 77.0965, "matched_fragments": 120, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium microcysteis", "strain": "strain=MaA-Y11", "accession": "GCA_006385255.1", "taxid": 2596891, "species_taxid": 2596891, "relation_to_type": "type", "validated": true, "ani": 76.9788, "matched_fragments": 91, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caeni", "strain": "strain=CGMCC 1.7031", "accession": "GCA_900101895.1", "taxid": 490189, "species_taxid": 490189, "relation_to_type": "type", "validated": true, "ani": 76.8067, "matched_fragments": 183, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium kingsejongi", "strain": "strain=WV39", "accession": "GCA_003076475.1", "taxid": 1678728, "species_taxid": 1678728, "relation_to_type": "type", "validated": true, "ani": 76.7064, "matched_fragments": 80, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tructae", "strain": "strain=CCUG 60100", "accession": "GCA_002217475.1", 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