{ "type": "genome", "identifier": "GCF_012911815.1", "organism": "Alteromonas ponticola", "title": "Alteromonas ponticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012911815.1", "bioproject": "PRJNA224116", "biosample": "SAMN14445999", "wgs_master": "JAATNW000000000.1", "refseq_category": "reference genome", "taxid": "2720613", "species_taxid": "2720613", "organism_name": "Alteromonas ponticola", "infraspecific_name": "strain=MYP5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1291181v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_012911815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/911/815/GCF_012911815.1_ASM1291181v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3602801", "genome_size_ungapped": "3602801", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012911815.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3241", "protein_coding_gene_count": "3155", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas ponticola" ], "sample_taxid": [ "2720613" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju Island" ], "sample_host_location_id": [], "data_size": "1.030 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3602801", "Number of Sequences": "22", "Longest Sequences (bp)": "572791", "N50 (bp)": "468870", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.1", "Number of CDSs": "3177", "Average Protein Length": "336.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas ponticola", "strain": "strain=MYP5", "accession": "GCA_012911815.1", "taxid": 2720613, "species_taxid": 2720613, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1190, "total_fragments": 1191, "ani_threshold": 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"GCA_005222225.1", "taxid": 914153, "species_taxid": 914153, "relation_to_type": "type", "validated": true, "ani": 78.1012, "matched_fragments": 149, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas antoniana", "strain": "strain=MD_567", "accession": "GCA_019249295.1", "taxid": 2803813, "species_taxid": 2803813, "relation_to_type": "type", "validated": true, "ani": 77.9851, "matched_fragments": 162, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimonas profundi", "strain": "strain=HHU 13199", "accession": "GCA_014750655.1", "taxid": 2729140, "species_taxid": 2729140, "relation_to_type": "type", "validated": true, "ani": 77.9548, "matched_fragments": 140, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas profundi", "strain": "strain=345S023", "accession": "GCA_010500865.1", "taxid": 2696062, "species_taxid": 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